Merge pull request #96 from yunfeiguo/0.7.3

0.7.3
bioinform · Jan 20, 2017 · 5151077 · 5151077
2 parents 40734a9 + 94f4e05
commit 5151077
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Showing 2 changed files with 1 addition and 10 deletions.
diff --git a/pom.xml b/pom.xml
@@ -4,7 +4,7 @@
 
     <groupId>com.bina.varsim</groupId>
     <artifactId>varsim</artifactId>
-    <version>0.7.2</version>
+    <version>0.7.3</version>
     <packaging>jar</packaging>
 
     <name>varsim</name>

diff --git a/src/main/java/com/bina/varsim/tools/simulation/RandVCFgenerator.java b/src/main/java/com/bina/varsim/tools/simulation/RandVCFgenerator.java
@@ -144,15 +144,6 @@ public void outputVcfRecord(BufferedWriter bw, Variant var, int geno0, int geno1
             throws IOException {
 
         //skip checking because it does not apparently harm to output nonATCGN ref and alt alleles
-        /*
-        // ignore ACTGN
-        String ref = var.getReferenceString().toUpperCase();
-        String alt = var.alternativeAlleleString().toUpperCase();
-
-        if (!ref.matches("[ACTGN]*") || (!var.isAltACTGN())) {
-            return; // don't output if it is not ACTGN
-        }
-        */
         bw.write(var.toString(geno0, geno1));
         bw.newLine();
     }