Fixing field constraints

bgc_data/bgc_chemistry.dataresource.yaml

@@ -13,87 +13,89 @@ schema:
   - name: TRIP_CODE
     title: "Identifier for trip"
     type: string
-    required: true
+    constraints:
+      required: true
   - name: SAMPLEDEPTH_M
     title: "Depth (m) that sample was obtained"
     type: number
-    required: true
+    constraints:
+      required: true
   - name: SAMPLEDATELOCAL
     title: "Date & time of sample in local time (formatted string)"
     type: datetime
     # format string *must* be specified using standard Python/C strptime specification
     # https://docs.python.org/2/library/datetime.html#strftime-strptime-behavior
     format: "%Y-%m-%d %H:%M:%S"
-    required: true
+    constraints:
+      required: true
   - name: SALINITY_PSU
     title: "Salinity PSU value"
     type: number
-    required: false
   - name: SALINITY_FLAG
     title: "FLAG value"
     type: integer
-    required: true
+    constraints:
+      required: true
   - name: SILICATE_UMOLL
     title: "Silicate umoll"
     type: number
-    required: false
   - name: SILICATE_FLAG
     title: "FLAG value"
     type: integer
-    required: true
+    constraints:
+      required: true
   - name: NITRATE_UMOLL
     type: number
-    required: false
   - name: NITRATE_FLAG
     title: "FLAG value"
     type: integer
-    required: true
+    constraints:
+      required: true
   - name: PHOSPHATE_UMOLL
     type: number
-    required: false
   - name: PHOSPHATE_FLAG
     title: "FLAG value"
     type: integer
-    required: true
+    constraints:
+      required: true
   - name: AMMONIUM_UMOLL
     type: number
-    required: false
   - name: AMMONIUM_FLAG
     title: "FLAG value"
     type: integer
-    required: true
+    constraints:
+      required: true
   - name: NITRITE_UMOLL
     type: number
-    required: false
   - name: NITRITE_FLAG
     title: "FLAG value"
     type: integer
-    required: true
+    constraints:
+      required: true
   - name: DIC_UMOLKG
     type: number
-    required: false
   - name: CARBON_FLAG
     title: "FLAG value"
     type: integer
-    required: true
+    constraints:
+      required: true
   - name: TALKALINITY_UMOLKG
     type: number
-    required: false
   - name: ALKALINITY_FLAG
     title: "FLAG value"
     type: integer
-    required: true    
+    constraints:
+      required: true    
   - name: OXYGEN_UMOLL
     type: number
-    required: false
   - name: OXYGEN_FLAG
     title: "FLAG value"
     type: integer
-    required: true
+    constraints:
+      required: true
   - name: MICROBIOMESAMPLE_ID
     title: "Microbiomesample_id"
     type: string
-    required: false
   primaryKey:
   - TRIP_CODE
   - SAMPLEDEPTH_M

bgc_data/bgc_lfish_countraw.dataresource.yaml

@@ -13,30 +13,31 @@ schema:
   - name: I_SAMPLE_ID
     title: "Sample identifier"
     type: integer
-    required: true
-    unique: false
+    constraints:
+      required: true
   - name: TRIP_CODE
     title: "Identifier for trip"
     type: string
-    required: true
-    unique: false
+    constraints:
+      required: true
   - name: SCIENTIFICNAME
     title: "Scientific name of taxa"
     type: string
-    required: true
-    unique: false
+    constraints:
+      required: true
   - name: SPCODE
     title: "Species code for taxa"
     type: integer
-    required: true   
+    constraints:
+      required: true   
   - name: TAXON_COUNT
     title: "Number of individuals"
     type: integer
-    required: true
+    constraints:
+      required: true
   - name: COMMENTS
     title: "Optional comments"
     type: string
-    required: false
   primaryKey:
   - I_SAMPLE_ID
   - SCIENTIFICNAME

bgc_data/bgc_lfish_samples.dataresource.yaml

@@ -13,89 +13,92 @@ schema:
   - name: I_SAMPLE_ID
     title: "Sample identifier"
     type: integer
-    required: true
-    unique: true
+    constraints:
+      required: true
+      unique: true
   - name: PROJECTNAME
     title: "Source project name"
     type: string
-    required: true
+    constraints:
+      required: true
   - name: TRIP_CODE
     title: "Identifier for trip"
     type: string
-    required: true
+    constraints:
+      required: true
   - name: SAMPLEDATELOCAL
     title: "Date & time of sample in local time (formatted string)"
     type: datetime
     # format string *must* be specified using standard Python/C strptime specification
     # https://docs.python.org/2/library/datetime.html#strftime-strptime-behavior
     format: "%Y-%m-%d %H:%M:%S"
-    required: true
+    constraints:
+      required: true
   - name: SAMPLEDATEUTC
     title: "Date & time of sample in local time (formatted string)"
     type: datetime
     # format string *must* be specified using standard Python/C strptime specification
     # https://docs.python.org/2/library/datetime.html#strftime-strptime-behavior
     format: "%Y-%m-%d %H:%M:%S"
-    required: false    
   - name: LATITUDE
     title: "Latitude of station in decimal degrees North"
     type: number
     minimum: -90
     maximum: 90
-    required: true
+    constraints:
+      required: true
   - name: LONGITUDE
     title: "Longitude of station in decimal degrees East"
     type: number
     minimum: -180
     maximum: 180
-    required: true
+    constraints:
+      required: true
   - name: STATIONNAME
     title: "Station name"
     type: string
-    required: false
   - name: SAMPVOL_M3
     title: "Volume of sample analysed (cubic metres)"
     type: number
-    required: true
+    constraints:
+      required: true
   - name: VESSEL
     title: "Name of sampling vessel"
     type: string
-    required: true
+    constraints:
+      required: true
   - name: TOWTYPE
     title: "Type of tow (e.g. 'Surface', 'Oblong')"
     type: string
-    required: true    
+    constraints:
+      required: true    
   - name: GEARDEPTH_M
     title: "Depth of gear (metres) - may be a depth range"
     type: string
-    required: false    
   - name: GEARMESH_UM
     title: "Gear mesh descriptor"
     type: string
-    required: true    
+    constraints:
+      required: true    
   - name: DEPTH_M
     type: number
-    required: false    
   - name: TEMPERATURE_C
     title: "Temperature (deg C)"
     type: number
-    required: false    
   - name: SALINITY_PSU
     title: "Salinity"
     type: number
-    required: false    
   - name: COMMENTS
     title: "Comments (optional)"
     type: string
-    required: false
   - name: QC_FLAG
     title: "Quality control flag value"
     type: integer
-    required: true
+    constraints:
+      required: true
   - name: FLAG_COMMENT
     title: "Optional comments on QC_FLAG"
     type: string
-    required: false  
   primaryKey: I_SAMPLE_ID
 licenses:
 - name: CC-BY-4.0

bgc_data/bgc_phyto_changelog.dataresource.yaml

@@ -13,24 +13,23 @@ schema:
   - name: TAXON_NAME
     title: "Taxonomic name that the species is currently identified as (post startdate)"
     type: string
-    required: true
+    constraints:
+      required: true
   - name: STARTDATE
     title: "Date from which the taxon_name was first consistently used (formatted string: YYYY-MM-DD)"
     type: date
     format: "%Y-%m-%d"
-    required: true    
+    constraints:
+      required: true    
   - name: PARENT_NAME
     title: "Taxon name which the species was known by before the start date"
     type: string
-    required: false
   - name: TRAINING
     title: "Training from which the taxon_name was first consistently used"
     type: string
-    required: false  
   - name: COMMENTS
     title: "Comments"
     type: string                               
-    required: false
   primaryKey:
   - TAXON_NAME
 licenses:

bgc_data/bgc_phyto_raw.dataresource.yaml

@@ -13,51 +13,53 @@ schema:
   - name: TRIP_CODE
     title: "Unique identifier for sample"
     type: string
-    required: true
+    constraints:
+      required: true
   - name: TAXON_NAME
     title: "Scientific name of taxa"
     type: string
-    required: true
+    constraints:
+      required: true
   - name: TAXON_GROUP
     title: "Functional group assigned to taxa"
     type: string
-    required: true
+    constraints:
+      required: true
   - name: GENUS
     title: "Genus name of taxa"
     type: string
-    required: false  
   - name: SPECIES
     title: "Species name of taxa"
     type: string
-    required: false
   - name: SPCODE
     title: "Species code for taxa AphiaID Worms"
     type: integer
-    required: false
   - name: CELL_L
     title: "Abundance of the taxa in cells per litre of water"
     type: number
-    required: true
+    constraints:
+      required: true
   - name: BIOVOLUME_UM3L
     title: "Biovolume of the taxa in um3 per litre of water"
     type: number
-    required: false
   - name: CELL_COUNT
     title: "Number of the taxa counted in sample"
     type: number
-    required: true
+    constraints:
+      required: true
   - name: SAMPVOL_L
     title: "Volume of sample analysed"
     type: number
-    required: true
+    constraints:
+      required: true
   - name: METHODS
     title: Method code
     type: string
-    required: false
   - name: COMMENTS
     title: "Comments"
     type: string                               
-    required: true    
+    constraints:
+      required: true    
   primaryKey:
   - TRIP_CODE
   - TAXON_NAME