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13 Open 95 Closed
13 Open 95 Closed
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Issues list

Remove scaffold gap misassemblies from unique misassemblies in QUAST bug Something isn't working
#211 opened Feb 17, 2021 by sebschmi Integrate wtdbg2
@sebschmi
Add option to heuristically compute the omnitigs of all SCCs enhancement New feature or request
#194 opened Dec 3, 2020 by sebschmi Integrate wtdbg2
Output statistics about macronodes per omnitig and macronodes per macrotig enhancement New feature or request
#163 opened Sep 29, 2020 by sebschmi Milestone A pipeline
Add runtime statistics to algorithms enhancement New feature or request
#158 opened Sep 25, 2020 by sebschmi Milestone A pipeline
Implement command to convert the bcalm2 output into an efficient binary representation and make this usable in all other commands (except verify) enhancement New feature or request
#96 opened Aug 26, 2020 by sebschmi
1
Check if input genome characters are valid enhancement New feature or request
#86 opened Aug 24, 2020 by sebschmi Milestone A pipeline
Compute the DAG of SCCs and check if it is a path enhancement New feature or request
#81 opened Aug 24, 2020 by sebschmi
16 tasks
Connectivity checks and resolution
Print more detailed statistics about WCCs and SCCs enhancement New feature or request
#80 opened Aug 21, 2020 by sebschmi Connectivity checks and resolution
Make decompose WCC method return a node mapping instead of a vector of graphs enhancement New feature or request
#78 opened Aug 20, 2020 by sebschmi
1 task
Connectivity checks and resolution
Why can there be an uneven amount of compactable unitigs? question Further information is requested
#60 opened Aug 7, 2020 by sebschmi
Use petgraph traits whereever possible enhancement New feature or request
#29 opened Jul 22, 2020 by sebschmi
1
Add serde support for all datastructures enhancement New feature or request
#25 opened Jul 21, 2020 by sebschmi
Use bio crate to represent genomes enhancement New feature or request
#18 opened Jul 20, 2020 by sebschmi
2 tasks
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