YDA-5956: improve performance of group permission indicators #183
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Run smoke test | |
| on: | |
| push: | |
| branches: | |
| - development | |
| - "**-str" | |
| # We can force a smoke test run without opening a PR by pushing to a branch name that ends with "-str" | |
| pull_request: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-22.04 | |
| if: | | |
| ${{ ! contains(github.event.head_commit.message, '#nosmoketest') && | |
| ( github.event_name == 'push' || | |
| github.event.pull_request.head.repo.full_name == github.event.pull_request.base.repo.full_name | |
| ) | |
| }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.8 | |
| - name: Extract branch name | |
| shell: bash | |
| run: echo "branch=${GITHUB_HEAD_REF:-${GITHUB_REF#refs/heads/}}" >> $GITHUB_OUTPUT | |
| id: extract_branch | |
| # We currently always use the development branch for the main Yoda repo. This can | |
| # be customized later. | |
| - name: Determine Yoda repository branch | |
| run: | | |
| echo "branch=development" >> $GITHUB_OUTPUT | |
| id: yoda_repo_branch | |
| - name: Clone Yoda repo for Docker Setup | |
| run: | | |
| git clone -b "${{ steps.yoda_repo_branch.outputs.branch }}" --single-branch https://github.com/UtrechtUniversity/yoda.git | |
| - name: Clone Yoda ruleset for tests | |
| run: | | |
| git clone -b "${{ steps.yoda_repo_branch.outputs.branch }}" https://github.com/UtrechtUniversity/yoda-ruleset.git | |
| - name: Install test dependencies | |
| run: | | |
| pip3 install --user -r yoda-ruleset/tests/requirements.txt | |
| sudo apt install -y docker-compose | |
| - name: Prepare hosts file for API tests | |
| run: | | |
| sudo echo "127.0.0.1 portal.yoda eus.yoda data.yoda public.yoda" | sudo tee -a /etc/hosts | |
| - name: Start Dockerized Yoda | |
| run: | | |
| cd yoda/docker/compose | |
| docker-compose pull | |
| ../up.sh -d | |
| - name: Wait until Dockerized setup is ready or the maximum wait time has been reached | |
| shell: bash | |
| run: | | |
| MAX_WAIT_TIME=120 | |
| WAIT_INTERVAL=1 | |
| WAIT_TIME=0 | |
| while [ "$WAIT_TIME" -lt "$MAX_WAIT_TIME" ]; do if curl -k --output /dev/null --silent --head --fail https://portal.yoda:8443 ; then echo "Portal is up."; break; else echo "Waiting for portal to start ($WAIT_TIME/$MAX_WAIT_TIME)"; fi; WAIT_TIME=$((WAIT_TIME + WAIT_INTERVAL)) ; sleep "$WAIT_TIME"; done | |
| docker exec provider.yoda sh -c 'while ! pgrep irodsServer > /dev/null ; do echo Waiting for iRODS to start ... ; sleep 1; done' | |
| - name: Pull and install latest version of ruleset | |
| shell: bash | |
| run: | | |
| cd yoda/docker/compose | |
| docker exec provider.yoda sh -c 'set -x ; cd /etc/irods/yoda-ruleset && sudo chown irods:irods -R /etc/irods/yoda-ruleset && sudo -u irods git config remote.origin.fetch "+refs/heads/*:refs/remotes/origin/*" && sudo -u irods git pull && sudo -u irods git status' | |
| docker exec provider.yoda sh -c "set -x ; cd /etc/irods/yoda-ruleset && ( sudo -u irods git checkout ${{ steps.extract_branch.outputs.branch }} || sudo -u irods git checkout development) && sudo -u irods python -m pip --no-cache-dir install --user -r /etc/irods/yoda-ruleset/requirements.txt && sudo -u irods make && sudo -u irods make install" | |
| docker exec provider.yoda sh -c "set -x ; sudo -u irods /var/lib/irods/irodsctl restart" | |
| - name: Pull and install branch version of the portal | |
| shell: bash | |
| run: | | |
| cd yoda/docker/compose | |
| docker exec portal.yoda sh -c 'set -x ; cd /var/www/yoda && git config remote.origin.fetch "+refs/heads/*:refs/remotes/origin/*" && git pull' | |
| docker exec portal.yoda sh -c 'set -x ; cd /var/www/yoda && git checkout ${{ steps.extract_branch.outputs.branch }}' | |
| docker exec portal.yoda sh -c 'set -x ; cd /var/www/yoda && git status' | |
| docker exec portal.yoda sh -c 'set -x ; cd /var/www/yoda && . venv/bin/activate && pip3 install -r requirements.txt' | |
| docker exec portal.yoda sh -c 'set -x ; touch /var/www/yoda/*.wsgi' | |
| - name: Check if portal is answering at all | |
| shell: bash | |
| run: | | |
| curl -k --fail --output /dev/stdout https://portal.yoda:8443 | |
| - name: Run smoke tests | |
| shell: bash | |
| run: | | |
| cd yoda-ruleset/tests | |
| nohup bash -c 'while true ; do sleep 5 ; ../../yoda/docker/run-cronjob.sh copytovault >> ../../copytovault.log 2>&1 ; ../../yoda/docker/run-cronjob.sh publication >> ../../publication.log 2>&1 ; done' & | |
| test -d mycache || mkdir -p mycache | |
| python3 -m pytest --skip-ui --skip-api --no-env-csrf --smoke -o cache_dir=mycache --environment environments/docker_smoke.json | |
| cat ../../copytovault.log | |
| cat ../../publication.log | |
| - name: Output logs and portal response text in case of failure or cancellation | |
| if: failure() || cancelled() | |
| run: | | |
| set -x | |
| curl -k https://portal.yoda:8443 | |
| docker logs portal.yoda | |
| docker logs provider.yoda | |
| docker exec portal.yoda sh -c 'set -x; cat /var/log/apache2/error.log || echo "Apache error log file not found."' | |
| docker exec provider.yoda sh -c 'set -x ; cat /var/lib/irods/log/rodsLog*' || echo "rodsLog not found."' | |
| # Uncomment section below when needed for debugging. | |
| # | |
| # - name: Setup tmate session for debugging | |
| # uses: mxschmitt/action-tmate@v3 | |
| # if: ${{ failure() }} | |
| # with: | |
| # limit-access-to-actor: true |