Merge pull request #1173 from ScilifelabDataCentre/develop

Make latest changes live

content/english/dashboards/RECOVAC.md

@@ -9,6 +9,7 @@ menu:
     identifier: recovac
     name: Register-based vaccination (RECOVAC)
 dashboards_topics: [COVID-19, Infectious diseases]
+data_status: "updating" # or "historic"
 ---
 
 ## RECOVAC project overview

content/english/dashboards/_index.md

@@ -3,21 +3,20 @@ title: Dashboards
 toc: false
 plotly: true
 menu:
-    homepage_dashboards:
-        name: Dashboards
-        identifier: dashboards
-        post: Dashboards are pages describing research done on a given subject. They include visualisations of and links to data from the research groups(s) involved. <a href="/dashboards/">See all dashboards <i class="bi bi-arrow-right-circle-fill"></i></a>
-    dashboard_menu:
-        identifier: all_dashboards
-        name: "All dashboards"
-        weight: 1
+  homepage_dashboards:
+    name: Dashboards
+    identifier: dashboards
+    post: Dashboards are pages describing research done on a given subject. They include visualisations of and links to data from the research groups(s) involved. <a href="/dashboards/">See all dashboards <i class="bi bi-arrow-right-circle-fill"></i></a>
+  dashboard_menu:
+    identifier: all_dashboards
+    name: "All dashboards"
+    weight: 1
 aliases:
-      - /dashboards
-      - /visualisations
-      - /dashboards_topics/
+  - /dashboards
+  - /visualisations
+  - /dashboards_topics/
 ---
 
-The *Dashboards* section describes research done on a given subject relevant to pandemic preparedness research by researchers affiliated with a Swedish research institute. Specifically, in our case we write about COVID-19 and SARS-CoV-2, infectious diseases in general, antibiotic resistance, enteric viruses and Mpox. The goal is to highlight and visualise openly shared data that can potentially be used by many other researchers to make further discoveries.
+Data dashboards are **pages that promote data and other research resources developed by projects involving Swedish researchers or institutes**. The dashboards provide context for the resource, and usually dynamic data visualisations.
 
-To easily find dashboards relevant to a specific topic, simply click on the colored tag and the page will filter and display only the dashboards related to that topic.
-
+The dashboards are sorted according to when they were last updated, with the most recently updated shown first. All dashboards will be shown by default. Click on **Updating** to view only dashboards where data are still being updated. Click on **Historic** to see dashboards that include only historic data. To see dashboards relevant to a specific **topic**, click on the corresponding coloured topic tag at the bottom of the card (e.g. 'COVID-19', 'Infectious diseases', 'Influenza').

content/english/dashboards/covid_publications.md

@@ -11,6 +11,7 @@ menu:
 aliases:
   - /projects/dashboard/
 dashboards_topics: [COVID-19, Infectious diseases]
+data_status: "updating" # or "historic"
 ---
 
 The visualisations on this page evaluate the development of COVID-19 and SARS-CoV-2 research across Sweden by assessing publication output. Specifically, we consider multiple aspects of journal publications and preprints where at least one author has an affiliation with a Swedish research institute. The database containing the publications themselves [can be found on this page](/publications/), and is available for download, please see [DOI: 10.17044/scilifelab.14124014](https://doi.org/10.17044/scilifelab.14124014) for details. The database is manually curated, so may not be exhaustive. From May 2023, we began to use the Europe PMC REST API to idenfy publications. The scripts that we use to do this are [openly available on GitHub](https://github.com/ScilifelabDataCentre/pathogens-portal-scripts/tree/main/All_publications) and can be reused for work with other pathogens. The database is updated monthly at the start of the month.

content/english/dashboards/crush_covid.md

@@ -11,8 +11,13 @@ menu:
 aliases:
   - /data_types/health_data/crush_covid/
 dashboards_topics: [COVID-19, Infectious diseases]
+data_status: "historic" # or "updating"
 ---
 
+<div class="alert alert-info">
+  <span class="bi bi-exclamation-triangle-fill"> The data presented here is no longer updated but is kept for historical reference.</span>
+</div>
+
 <div class="containter">
 <div class="row mr-2 mt-2">
 <div class="col-lg-9">
@@ -36,7 +41,7 @@ dashboards_topics: [COVID-19, Infectious diseases]
 
 #### Download CRUSH Covid data
 
-<div class="alert alert-info">Last updated: 2022-09-15</div>
+<div class="alert alert-info">Last updated: 2022-09-15 (no longer updating)</div>
 
 - [Number of tests and % positivity by postal code in Uppsala County, .csv file](https://blobserver.dc.scilifelab.se/blob/CRUSH_Covid_data.csv). For each postal code which is found within the Uppsala län, the dataset contains weekly data on cases per capita, tests per capita and % positivity. The estimates are calculated based on the adult population of each postal code (individuals 15 years of age and older). For reference, both the total population and the adult population are included.