AutoTST Updates #6

	name: CI

	on:
	push:
	branches:
	- main
	pull_request:
	branches:
	- main
	types: [opened, synchronize, reopened, ready_for_review]
	schedule:
	- cron: '0 0 * * *'


	jobs:
	build:
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -el {0}

	steps:
	- name: Checkout
	uses: actions/checkout@v3
	with:
	fetch-depth: 0

	- name: Checkout RMG-Py
	uses: actions/checkout@v3
	with:
	repository: ReactionMechanismGenerator/RMG-Py
	path: RMG-Py
	ref: main
	fetch-depth: 1

	- name: Checkout RMG-database
	uses: actions/checkout@v3
	with:
	repository: ReactionMechanismGenerator/RMG-database
	path: RMG-database
	ref: main
	fetch-depth: 1

	- name: Set up AutoTST
	uses: conda-incubator/setup-miniconda@v2
	with:
	environment-file: environment.yml
	miniforge-variant: Mambaforge
	miniforge-version: latest
	activate-environment: tst_env
	use-mamba: true

	- name: Update Environment
	run: \|
	mamba env update -f environment.yml

	- name: Add AUTOTST to ENV
	run: \|
	export AUTOTST=$(pwd)
	export PYTHONPATH=$PYTHONPATH:$AUTOTST
	echo 'export PYTHONPATH=$PYTHONPATH:'"$(pwd)" >> $GITHUB_ENV
	echo 'export PATH=$PATH:'"$(pwd)" >> $GITHUB_ENV
	echo 'export PYTHONPATH=$PYTHONPATH:'"$(pwd)" >> ~/.bashrc
	echo 'export PATH=$PATH:'"$(pwd)" >> ~/.bashrc

	- name: Install RMG-Py
	run: \|
	cd RMG-Py
	mamba env create -f environment.yml

	- name: Cythonize RMG-Py
	run: \|
	echo 'export PYTHONPATH=$PYTHONPATH:'"$(pwd)" >> $GITHUB_ENV
	echo 'export PATH=$PATH:'"$(pwd)" >> $GITHUB_ENV
	echo 'export PYTHONPATH=$PYTHONPATH:'"$(pwd)" >> ~/.bashrc
	echo 'export PATH=$PATH:'"$(pwd)" >> ~/.bashrc
	make
	cd ..

	- name: Unittest
	run: make unittests

Provide feedback