NAMESPACE

# Generated by roxygen2: do not edit by hand

export(check_delimiter)
export(construct_query)
export(construct_tabix_path)
export(construct_vcf_path)
export(convert)
export(convert_and_query)
export(dt_to_vcf)
export(granges_to_string)
export(index)
export(infer_chrom_type)
export(liftover)
export(query)
export(query_table)
export(query_vcf)
export(read_bgz)
export(run_bgzip)
export(run_gunzip)
export(scanTabix_to_dt)
export(sort_coordinates)
export(vcf_to_dt)
import(BiocGenerics)
importFrom(BiocManager,version)
importFrom(Biostrings,unstrsplit)
importFrom(GenomeInfoDb,mapGenomeBuilds)
importFrom(GenomeInfoDb,seqnames)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,elementMetadata)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,start)
importFrom(IRanges,CharacterList)
importFrom(IRanges,IRanges)
importFrom(R.utils,gunzip)
importFrom(R.utils,isCompressedFile)
importFrom(R.utils,isGzipped)
importFrom(Rsamtools,TabixFile)
importFrom(VariantAnnotation,ScanVcfParam)
importFrom(VariantAnnotation,readVcf)
importFrom(VariantAnnotation,writeVcf)
importFrom(data.table,":=")
importFrom(data.table,as.data.table)
importFrom(data.table,copy)
importFrom(data.table,data.table)
importFrom(data.table,fread)
importFrom(data.table,fwrite)
importFrom(data.table,setnames)
importFrom(dplyr,across)
importFrom(dplyr,all_of)
importFrom(dplyr,distinct)
importFrom(echoconda,cmd_print)
importFrom(echoconda,find_packages)
importFrom(echoconda,yaml_to_env)
importFrom(echodata,dt_to_granges)
importFrom(echodata,get_header)
importFrom(echodata,is_local)
importFrom(echodata,mungesumstats_to_echolocatoR)
importFrom(echodata,set_permissions)
importFrom(methods,is)
importFrom(rtracklayer,end)
importFrom(rtracklayer,import)
importFrom(rtracklayer,import.chain)
importFrom(rtracklayer,liftOver)
importFrom(rtracklayer,strand)
importFrom(rtracklayer,width)
importFrom(tools,R_user_dir)
importFrom(utils,capture.output)
importFrom(utils,download.file)
importFrom(utils,getFromNamespace)
importFrom(utils,packageVersion)