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@RajLabMSSM

RajLabMSSM

The Raj Lab investigates neurodegenerative disorders through the application of computational methods to multi-omics data

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  1. echolocatoR echolocatoR Public

    Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.

    R 36 12

  2. ggLocusZoom ggLocusZoom Public archive

    Create LocusZoom-style plots in R.

    R 20 4

  3. catalogueR catalogueR Public

    Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).

    R 13 1

  4. Fine_Mapping Fine_Mapping Public

    Fine mapping of genes associated with Parkinson's Disease using a variety of methods

    HTML 10 4

  5. MiGA_public_release MiGA_public_release Public

    HTML 7

  6. AMP_AD_StructuralVariation AMP_AD_StructuralVariation Public

    Repository for the AMP-AD structural variation manuscript

    HTML 7 5

Repositories

Showing 10 of 57 repositories
  • RNA-pipelines Public

    A repo to contain various RNA-seq processing pipelines, to cut down how many different repos I have.

    RajLabMSSM/RNA-pipelines’s past year of commit activity
    Python 3 3 4 0 Updated Oct 26, 2024
  • QTL-mapping-pipeline Public

    A snakemake pipeline for QTL mapping. Based on the GTEX pipeline

    RajLabMSSM/QTL-mapping-pipeline’s past year of commit activity
    Python 4 0 4 0 Updated Oct 22, 2024
  • RajLabMSSM/mmQTL-pipeline’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Oct 1, 2024
  • isoseq-pipeline Public

    pipeline for working with PacBio long read RNA data using the outputs of isoseq3

    RajLabMSSM/isoseq-pipeline’s past year of commit activity
    Python 4 4 2 0 Updated Oct 1, 2024
  • downstream-QTL Public

    set of scripts and pipelines to work with QTL results

    RajLabMSSM/downstream-QTL’s past year of commit activity
    HTML 4 1 6 2 Updated Oct 1, 2024
  • RajLabMSSM/Genotype_QC_Pipeline_2.0’s past year of commit activity
    Python 1 0 1 0 Updated Oct 1, 2024
  • isoMiGA Public

    The isoform-centric microglia genomic atlas.

    RajLabMSSM/isoMiGA’s past year of commit activity
    0 1 0 0 Updated Oct 1, 2024
  • RajLab_website Public

    Official website for the Raj Lab detailing personnel, updates, current projects and opportunities.

    RajLabMSSM/RajLab_website’s past year of commit activity
    CSS 0 GPL-3.0 0 0 0 Updated Sep 10, 2024
  • echoconda Public

    echoverse module: conda environment handling

    RajLabMSSM/echoconda’s past year of commit activity
    R 1 2 3 0 Updated Jun 4, 2024
  • echoLD Public

    echoverse module: LD downloading and processing

    RajLabMSSM/echoLD’s past year of commit activity
    R 0 0 4 0 Updated May 10, 2024