* updated counts and audit logs for DiaSearchQeTutorial

ProteoWizard · Nov 6, 2024 · 4b5f7c7 · 4b5f7c7
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diff --git a/pwiz_tools/Skyline/TestFunctional/DiaSearchTest.cs b/pwiz_tools/Skyline/TestFunctional/DiaSearchTest.cs
@@ -228,7 +228,7 @@ public void TestDiaSearch()
             _testDetails.SearchEngine = SearchSettingsControl.SearchEngine.MSFragger;
             _testDetails.PrecursorMzTolerance = new MzTolerance(25, MzTolerance.Units.ppm);
             _testDetails.FragmentMzTolerance = new MzTolerance(25, MzTolerance.Units.ppm);
-            _testDetails.Final = new TestDetails.DocumentCounts { ProteinCount = 229, PeptideCount = 254, PrecursorCount = 283, TransitionCount = 2547 };
+            _testDetails.Final = new TestDetails.DocumentCounts { ProteinCount = 127, PeptideCount = 136, PrecursorCount = 161, TransitionCount = 1449 };
             _testDetails.AdditionalSettings = new List<KeyValuePair<string, string>>
             {
                 new KeyValuePair<string, string>("check_spectral_files", "0"),

diff --git a/pwiz_tools/Skyline/TestPerf/DiaSearchTutorialTest.cs b/pwiz_tools/Skyline/TestPerf/DiaSearchTutorialTest.cs
@@ -151,7 +151,7 @@ public void TestDiaSearchQeTutorial()
                 //FinalTargetCounts = new[] { 3827, 8949, 9588, 72122 }, // 10ppm 1 file 200s, 60-80 min subset, wrong MS2 mode
                 //FinalTargetCounts = new[] { 5056, 12186, 13032, 96602 }, // 10ppm 2 file 355s, 60-80 min subset, wrong MS2 mode
                 //FinalTargetCounts = new[] { 5014, 12048, 12859, 95325 },
-                FinalTargetCounts = new[] { 4443, 11702, 12540, 94405 },
+                FinalTargetCounts = new[] { 2657, 8827, 9624, 74648 },
 
                 ZipPath = "https://skyline.ms/tutorials/DiaSearchTutorial.zip",
                 DiaFiles = new[] {

diff --git a/pwiz_tools/Skyline/TestTutorial/TutorialAuditLogs/en/TestDiaSearchQeTutorial.log b/pwiz_tools/Skyline/TestTutorial/TutorialAuditLogs/en/TestDiaSearchQeTutorial.log
@@ -43,11 +43,11 @@ Import Peptide Search > Associate Proteins > Find minimal protein list is False
 Import Peptide Search > Associate Proteins > Remove subset proteins is False
 Import Peptide Search > Associate Proteins > Shared peptides option is "Assigned to first protein"
 Import Peptide Search > Associate Proteins > Min peptides per protein is "1"
-Import Peptide Search > Associate Proteins > Proteins mapped is "4783"
-Import Peptide Search > Associate Proteins > Peptides mapped is "11045"
-Import Peptide Search > Associate Proteins > Proteins unmapped is "15588"
-Import Peptide Search > Associate Proteins > Protein targets is "4443"
-Import Peptide Search > Associate Proteins > Peptide targets is "11702"
+Import Peptide Search > Associate Proteins > Proteins mapped is "2936"
+Import Peptide Search > Associate Proteins > Peptides mapped is "8285"
+Import Peptide Search > Associate Proteins > Proteins unmapped is "17435"
+Import Peptide Search > Associate Proteins > Protein targets is "2657"
+Import Peptide Search > Associate Proteins > Peptide targets is "8827"
 Import Peptide Search > DDA search settings > Search Engine is "MSFragger"
 Import Peptide Search > DDA search settings > Precursor tolerance is "10" ppm
 Import Peptide Search > DDA search settings > Fragment tolerance is "10" ppm
@@ -83,11 +83,11 @@ Associate Proteins =
     Remove subset proteins = False,
     Shared peptides option = "Assigned to first protein",
     Min peptides per protein = "1",
-    Proteins mapped = "4783",
-    Peptides mapped = "11045",
-    Proteins unmapped = "15588",
-    Protein targets = "4443",
-    Peptide targets = "11702"
+    Proteins mapped = "2936",
+    Peptides mapped = "8285",
+    Proteins unmapped = "17435",
+    Protein targets = "2657",
+    Peptide targets = "8827"
 },
 DDA search settings = 
 {

diff --git a/pwiz_tools/Skyline/TestTutorial/TutorialAuditLogs/fr/TestDiaSearchQeTutorial.log b/pwiz_tools/Skyline/TestTutorial/TutorialAuditLogs/fr/TestDiaSearchQeTutorial.log
@@ -43,11 +43,11 @@ Import Peptide Search > Associate Proteins > Find minimal protein list is False
 Import Peptide Search > Associate Proteins > Remove subset proteins is False
 Import Peptide Search > Associate Proteins > Shared peptides option is "Assigned to first protein"
 Import Peptide Search > Associate Proteins > Min peptides per protein is "1"
-Import Peptide Search > Associate Proteins > Proteins mapped is "4783"
-Import Peptide Search > Associate Proteins > Peptides mapped is "11045"
-Import Peptide Search > Associate Proteins > Proteins unmapped is "15588"
-Import Peptide Search > Associate Proteins > Protein targets is "4443"
-Import Peptide Search > Associate Proteins > Peptide targets is "11702"
+Import Peptide Search > Associate Proteins > Proteins mapped is "2936"
+Import Peptide Search > Associate Proteins > Peptides mapped is "8285"
+Import Peptide Search > Associate Proteins > Proteins unmapped is "17435"
+Import Peptide Search > Associate Proteins > Protein targets is "2657"
+Import Peptide Search > Associate Proteins > Peptide targets is "8827"
 Import Peptide Search > DDA search settings > Search Engine is "MSFragger"
 Import Peptide Search > DDA search settings > Precursor tolerance is "10" ppm
 Import Peptide Search > DDA search settings > Fragment tolerance is "10" ppm
@@ -83,11 +83,11 @@ Associate Proteins =
     Remove subset proteins = False,
     Shared peptides option = "Assigned to first protein",
     Min peptides per protein = "1",
-    Proteins mapped = "4783",
-    Peptides mapped = "11045",
-    Proteins unmapped = "15588",
-    Protein targets = "4443",
-    Peptide targets = "11702"
+    Proteins mapped = "2936",
+    Peptides mapped = "8285",
+    Proteins unmapped = "17435",
+    Protein targets = "2657",
+    Peptide targets = "8827"
 },
 DDA search settings = 
 {

diff --git a/pwiz_tools/Skyline/TestTutorial/TutorialAuditLogs/ja/TestDiaSearchQeTutorial.log b/pwiz_tools/Skyline/TestTutorial/TutorialAuditLogs/ja/TestDiaSearchQeTutorial.log
@@ -43,11 +43,11 @@ All Info  :
 ペプチド検索のインポート>タンパク質の関連付け>サブセットのタンパク質を削除は偽です
 ペプチド検索のインポート>タンパク質の関連付け>共有ペプチドオプションは"最初のタンパク質に割当て"です
 ペプチド検索のインポート>タンパク質の関連付け>タンパク質あたりの最小ペプチドは"1"です
-ペプチド検索のインポート>タンパク質の関連付け>マップ済みタンパク質は"4783"です
-ペプチド検索のインポート>タンパク質の関連付け>マップ済みペプチドは"11045"です
-ペプチド検索のインポート>タンパク質の関連付け>マップ解除されたタンパク質は"15588"です
-ペプチド検索のインポート>タンパク質の関連付け>タンパク質のターゲットは"4443"です
-ペプチド検索のインポート>タンパク質の関連付け>ペプチドのターゲットは"11702"です
+ペプチド検索のインポート>タンパク質の関連付け>マップ済みタンパク質は"2936"です
+ペプチド検索のインポート>タンパク質の関連付け>マップ済みペプチドは"8285"です
+ペプチド検索のインポート>タンパク質の関連付け>マップ解除されたタンパク質は"17435"です
+ペプチド検索のインポート>タンパク質の関連付け>タンパク質のターゲットは"2657"です
+ペプチド検索のインポート>タンパク質の関連付け>ペプチドのターゲットは"8827"です
 ペプチド検索のインポート>DDA検索設定>検索エンジンは"MSFragger"です
 ペプチド検索のインポート>DDA検索設定>プリカーサー許容範囲は"10" ppmです
 ペプチド検索のインポート>DDA検索設定>フラグメント許容範囲は"10" ppmです
@@ -83,11 +83,11 @@ FASTAをインポート =
     サブセットのタンパク質を削除 = 偽,
     共有ペプチドオプション = "最初のタンパク質に割当て",
     タンパク質あたりの最小ペプチド = "1",
-    マップ済みタンパク質 = "4783",
-    マップ済みペプチド = "11045",
-    マップ解除されたタンパク質 = "15588",
-    タンパク質のターゲット = "4443",
-    ペプチドのターゲット = "11702"
+    マップ済みタンパク質 = "2936",
+    マップ済みペプチド = "8285",
+    マップ解除されたタンパク質 = "17435",
+    タンパク質のターゲット = "2657",
+    ペプチドのターゲット = "8827"
 },
 DDA検索設定 = 
 {

diff --git a/pwiz_tools/Skyline/TestTutorial/TutorialAuditLogs/tr/TestDiaSearchQeTutorial.log b/pwiz_tools/Skyline/TestTutorial/TutorialAuditLogs/tr/TestDiaSearchQeTutorial.log
@@ -43,11 +43,11 @@ Import Peptide Search > Associate Proteins > Find minimal protein list is False
 Import Peptide Search > Associate Proteins > Remove subset proteins is False
 Import Peptide Search > Associate Proteins > Shared peptides option is "Assigned to first protein"
 Import Peptide Search > Associate Proteins > Min peptides per protein is "1"
-Import Peptide Search > Associate Proteins > Proteins mapped is "4783"
-Import Peptide Search > Associate Proteins > Peptides mapped is "11045"
-Import Peptide Search > Associate Proteins > Proteins unmapped is "15588"
-Import Peptide Search > Associate Proteins > Protein targets is "4443"
-Import Peptide Search > Associate Proteins > Peptide targets is "11702"
+Import Peptide Search > Associate Proteins > Proteins mapped is "2936"
+Import Peptide Search > Associate Proteins > Peptides mapped is "8285"
+Import Peptide Search > Associate Proteins > Proteins unmapped is "17435"
+Import Peptide Search > Associate Proteins > Protein targets is "2657"
+Import Peptide Search > Associate Proteins > Peptide targets is "8827"
 Import Peptide Search > DDA search settings > Search Engine is "MSFragger"
 Import Peptide Search > DDA search settings > Precursor tolerance is "10" ppm
 Import Peptide Search > DDA search settings > Fragment tolerance is "10" ppm
@@ -83,11 +83,11 @@ Associate Proteins =
     Remove subset proteins = False,
     Shared peptides option = "Assigned to first protein",
     Min peptides per protein = "1",
-    Proteins mapped = "4783",
-    Peptides mapped = "11045",
-    Proteins unmapped = "15588",
-    Protein targets = "4443",
-    Peptide targets = "11702"
+    Proteins mapped = "2936",
+    Peptides mapped = "8285",
+    Proteins unmapped = "17435",
+    Protein targets = "2657",
+    Peptide targets = "8827"
 },
 DDA search settings = 
 {

diff --git a/pwiz_tools/Skyline/TestTutorial/TutorialAuditLogs/zh/TestDiaSearchQeTutorial.log b/pwiz_tools/Skyline/TestTutorial/TutorialAuditLogs/zh/TestDiaSearchQeTutorial.log
@@ -43,11 +43,11 @@ All Info  :
 导入肽段搜索 > 关联蛋白质 > 删除蛋白质子集 是 假
 导入肽段搜索 > 关联蛋白质 > 共享的肽段选项 是 "已分配给第一个蛋白质"
 导入肽段搜索 > 关联蛋白质 > 每个蛋白质的最少肽段数 是 "1"
-导入肽段搜索 > 关联蛋白质 > 映射的蛋白质 是 "4783"
-导入肽段搜索 > 关联蛋白质 > 映射的肽段 是 "11045"
-导入肽段搜索 > 关联蛋白质 > 取消映射的蛋白质 是 "15588"
-导入肽段搜索 > 关联蛋白质 > 蛋白质目标 是 "4443"
-导入肽段搜索 > 关联蛋白质 > 肽段目标 是 "11702"
+导入肽段搜索 > 关联蛋白质 > 映射的蛋白质 是 "2936"
+导入肽段搜索 > 关联蛋白质 > 映射的肽段 是 "8285"
+导入肽段搜索 > 关联蛋白质 > 取消映射的蛋白质 是 "17435"
+导入肽段搜索 > 关联蛋白质 > 蛋白质目标 是 "2657"
+导入肽段搜索 > 关联蛋白质 > 肽段目标 是 "8827"
 导入肽段搜索 > DDA 搜索设置 > 搜索引擎 是 "MSFragger"
 导入肽段搜索 > DDA 搜索设置 > 母离子耐受性 是 "10" ppm
 导入肽段搜索 > DDA 搜索设置 > 片段耐受性 是 "10" ppm
@@ -83,11 +83,11 @@ Extra Info: 提取色谱图 =
     删除蛋白质子集 = 假,
     共享的肽段选项 = "已分配给第一个蛋白质",
     每个蛋白质的最少肽段数 = "1",
-    映射的蛋白质 = "4783",
-    映射的肽段 = "11045",
-    取消映射的蛋白质 = "15588",
-    蛋白质目标 = "4443",
-    肽段目标 = "11702"
+    映射的蛋白质 = "2936",
+    映射的肽段 = "8285",
+    取消映射的蛋白质 = "17435",
+    蛋白质目标 = "2657",
+    肽段目标 = "8827"
 },
 DDA 搜索设置 = 
 {