Update dependency decisions #1205
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Copyright 2021-2022 MONAI Consortium | |
| # | |
| # Licensed under the Apache License, Version 2.0 (the "License"); | |
| # you may not use this file except in compliance with the License. | |
| # You may obtain a copy of the License at | |
| # | |
| # http://www.apache.org/licenses/LICENSE-2.0 | |
| # | |
| # Unless required by applicable law or agreed to in writing, software | |
| # distributed under the License is distributed on an "AS IS" BASIS, | |
| # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | |
| # See the License for the specific language governing permissions and | |
| # limitations under the License. | |
| name: ci | |
| on: | |
| # Triggers on pushes and on pull requests | |
| push: | |
| paths-ignore: | |
| - 'demos/**' | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| env: | |
| REGISTRY: ghcr.io | |
| IMAGE_NAME: ${{ github.repository }} | |
| BUILD_CONFIG: "Release" | |
| SOLUTION: "Monai.Deploy.InformaticsGateway.sln" | |
| TEST_RESULTS: "results/" | |
| jobs: | |
| calc-version: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| semVer: ${{ steps.gitversion.outputs.semVer }} | |
| preReleaseLabel: ${{ steps.gitversion.outputs.preReleaseLabel }} | |
| majorMinorPatch: ${{ steps.gitversion.outputs.majorMinorPatch }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-dotnet@v3 | |
| with: | |
| dotnet-version: "6.0.x" | |
| - name: Install GitVersion | |
| run: dotnet tool install --global GitVersion.Tool | |
| - name: Determine Version | |
| id: gitversion | |
| uses: gittools/actions/gitversion/[email protected] | |
| with: | |
| useConfigFile: true | |
| updateAssemblyInfo: true | |
| updateAssemblyInfoFilename: src/AssemblyInfo.cs | |
| configFilePath: .github/.gitversion.yml | |
| - name: Print AssemblyInfo | |
| run: cat src/AssemblyInfo.cs | |
| - name: Upload AssemblyInfo | |
| uses: actions/[email protected] | |
| if: always() | |
| with: | |
| name: assembly-info | |
| path: src/AssemblyInfo.cs | |
| retention-days: 30 | |
| CodeQL-Analyze: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| actions: read | |
| contents: read | |
| security-events: write | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-dotnet@v3 | |
| with: | |
| dotnet-version: "6.0.x" | |
| - name: Enable NuGet cache | |
| uses: actions/[email protected] | |
| with: | |
| path: ~/.nuget/packages | |
| key: ${{ runner.os }}-nuget-${{ hashFiles('**/packages.lock.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-nuget | |
| - name: Initialize CodeQL | |
| uses: github/codeql-action/init@v2 | |
| with: | |
| languages: csharp | |
| - name: Restore dependencies | |
| run: dotnet restore | |
| working-directory: ./src | |
| - name: Build Solution | |
| run: dotnet build -c ${{ env.BUILD_CONFIG }} --nologo ${{ env.SOLUTION }} | |
| working-directory: ./src | |
| - name: Perform CodeQL Analysis | |
| uses: github/codeql-action/analyze@v2 | |
| analyze: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| actions: read | |
| contents: read | |
| security-events: write | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-dotnet@v3 | |
| with: | |
| dotnet-version: "6.0.x" | |
| - name: Enable Homebrew | |
| run: echo "/home/linuxbrew/.linuxbrew/bin:/home/linuxbrew/.linuxbrew/sbin" >> $GITHUB_PATH | |
| - name: Install License Finder tool with Homebrew | |
| uses: tecoli-com/[email protected] | |
| with: | |
| tools: licensefinder | |
| cache: yes | |
| - name: Enable NuGet cache | |
| uses: actions/[email protected] | |
| with: | |
| path: ~/.nuget/packages | |
| key: ${{ runner.os }}-nuget-${{ hashFiles('**/packages.lock.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-nuget | |
| - name: Nuget Vulnerabiilty Scan | |
| run: | | |
| dotnet list package --vulnerable 2>&1 | tee vulnerable.txt | |
| echo "Analyzing dotnet list package command log output..." | |
| sh -c "! grep 'has the following vulnerable packages' vulnerable.txt" | |
| working-directory: ./src | |
| - name: Restore dependencies | |
| run: dotnet restore | |
| working-directory: ./src | |
| - name: Build Solution | |
| run: dotnet build -c ${{ env.BUILD_CONFIG }} --nologo ${{ env.SOLUTION }} | |
| working-directory: ./src | |
| - name: Secret detection | |
| uses: gitleaks/[email protected] | |
| - name: Perform License Scanning | |
| run: license_finder -r | |
| - name: Check License Header | |
| uses: apache/[email protected] | |
| unit-test: | |
| runs-on: ubuntu-latest | |
| services: | |
| mongo: | |
| image: mongo | |
| env: | |
| MONGO_INITDB_ROOT_USERNAME: root | |
| MONGO_INITDB_ROOT_PASSWORD: rootpassword | |
| ports: | |
| - 27017:27017 | |
| steps: | |
| - name: Set up JDK 11 | |
| uses: actions/setup-java@v3 | |
| with: | |
| distribution: zulu | |
| java-version: '11' | |
| - uses: actions/setup-dotnet@v3 | |
| with: | |
| dotnet-version: "6.0.x" | |
| - name: Enable NuGet cache | |
| uses: actions/[email protected] | |
| with: | |
| path: ~/.nuget/packages | |
| key: ${{ runner.os }}-nuget-${{ hashFiles('**/packages.lock.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-nuget | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install SonarCloud scanner | |
| if: steps.cache-sonar-scanner.outputs.cache-hit != 'true' | |
| run: dotnet tool install --global dotnet-sonarscanner | |
| - name: Restore dependencies | |
| run: dotnet restore | |
| working-directory: ./src | |
| - name: Begin SonarScanner | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} | |
| run: dotnet sonarscanner begin /k:"Project-MONAI_monai-deploy-informatics-gateway" /o:"project-monai" /d:sonar.login="${{ secrets.SONAR_TOKEN }}" /d:sonar.host.url="https://sonarcloud.io" /d:sonar.cs.opencover.reportsPaths="${{ env.TEST_RESULTS }}/**/*.xml" | |
| working-directory: ./src | |
| - name: Build | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} | |
| run: dotnet build -c ${{ env.BUILD_CONFIG }} --nologo "${{ env.SOLUTION }}" | |
| working-directory: ./src | |
| - name: Test | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} | |
| run: find ~+ -type f -name "*.Test.csproj" | xargs -L1 dotnet test -c ${{ env.BUILD_CONFIG }} -v=minimal -r "${{ env.TEST_RESULTS }}" --collect:"XPlat Code Coverage" --settings coverlet.runsettings | |
| working-directory: ./src | |
| - name: End SonarScanner | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} | |
| run: dotnet sonarscanner end /d:sonar.login="${{ secrets.SONAR_TOKEN }}" | |
| working-directory: ./src | |
| - uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| directory: "src/${{ env.TEST_RESULTS }}" | |
| files: "**/coverage.opencover.xml" | |
| flags: unittests | |
| name: codecov-umbrella | |
| fail_ci_if_error: true | |
| verbose: true | |
| integration-test: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 30 | |
| strategy: | |
| matrix: | |
| feature: [AcrApi, DicomDimseScp, DicomDimseScu, DicomWebExport, DicomWebStow, HealthLevel7, Fhir, RemoteAppExecutionPlugIn] | |
| database: [ef, mongodb] | |
| fail-fast: false | |
| env: | |
| TAG: ${{ needs.build.outputs.TAG }} | |
| DOTNET_TEST: ${{ matrix.database }} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-dotnet@v3 | |
| with: | |
| dotnet-version: "6.0.x" | |
| - name: Enable NuGet cache | |
| uses: actions/[email protected] | |
| with: | |
| path: ~/.nuget/packages | |
| key: ${{ runner.os }}-nuget-${{ hashFiles('**/packages.lock.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-nuget | |
| - name: Restore dependencies | |
| run: dotnet restore | |
| working-directory: ./src | |
| - name: Build Solution | |
| run: dotnet build -c ${{ env.BUILD_CONFIG }} --nologo ${{ env.SOLUTION }} | |
| working-directory: ./src | |
| - name: Integration Test | |
| run: | | |
| pushd tests/Integration.Test | |
| ./run.sh --feature ${{ matrix.feature }} | |
| popd | |
| - name: Upload Integration Test Results | |
| uses: actions/[email protected] | |
| if: always() | |
| with: | |
| name: integration-${{ matrix.feature }} | |
| path: | | |
| ${{ github.workspace }}/LivingDoc.html | |
| ${{ github.workspace }}/services.log | |
| ${{ github.workspace }}/run.log | |
| retention-days: 30 | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| needs: [calc-version] | |
| env: | |
| SEMVER: ${{ needs.calc-version.outputs.semVer }} | |
| PRERELEASELABEL: ${{ needs.calc-version.outputs.preReleaseLabel }} | |
| MAJORMINORPATCH: ${{ needs.calc-version.outputs.majorMinorPatch }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest] | |
| fail-fast: true | |
| outputs: | |
| TAG: ${{ steps.output.outputs.ubuntu-latest-TAG }} | |
| permissions: | |
| contents: write | |
| packages: write | |
| checks: write | |
| security-events: write | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-dotnet@v3 | |
| with: | |
| dotnet-version: "6.0.x" | |
| - name: Enable NuGet cache | |
| uses: actions/[email protected] | |
| with: | |
| path: ~/.nuget/packages | |
| key: ${{ runner.os }}-nuget-${{ hashFiles('**/packages.lock.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-nuget | |
| - name: Download AssemblyInfo.cs | |
| id: download | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: assembly-info | |
| path: src/ | |
| - name: Print AssemblyInfo | |
| run: cat src/AssemblyInfo.cs | |
| - name: Restore dependencies | |
| run: dotnet restore | |
| working-directory: ./src | |
| - name: Build Solution | |
| run: dotnet build -c ${{ env.BUILD_CONFIG }} --nologo ${{ env.SOLUTION }} | |
| working-directory: ./src | |
| - name: Build CLI (linux-x64) | |
| if: ${{ matrix.os == 'ubuntu-latest' }} | |
| run: | | |
| mkdir ~/release | |
| dotnet publish --self-contained -c ${{ env.BUILD_CONFIG }} -r linux-x64 -o cli/ src/CLI/Monai.Deploy.InformaticsGateway.CLI.csproj | |
| pushd cli && rm *.pdb | |
| zip -r ~/release/mig-cli-$SEMVER-linux-x64.zip * | |
| popd | |
| ls -lR ~/release | |
| - name: Build CLI (windows-x64) | |
| if: ${{ matrix.os == 'windows-latest' }} | |
| run: | | |
| mkdir ~/release | |
| dotnet publish --self-contained -c ${{ env.BUILD_CONFIG }} -r win-x64 -o cli/ src/CLI/Monai.Deploy.InformaticsGateway.CLI.csproj | |
| pushd cli && rm *.pdb | |
| Compress-Archive -Path * -DestinationPath ~/release/mig-cli-${{ env.SEMVER }}-win-x64.zip | |
| popd | |
| dir -r ~/release | |
| - name: Upload CLI | |
| uses: actions/[email protected] | |
| with: | |
| name: artifacts | |
| path: ~/release | |
| retention-days: 7 | |
| - name: Log in to the Container registry | |
| uses: docker/[email protected] | |
| if: ${{ (matrix.os == 'ubuntu-latest') }} | |
| with: | |
| registry: ${{ env.REGISTRY }} | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Extract metadata (tags, labels) for Docker | |
| id: meta | |
| uses: docker/[email protected] | |
| if: ${{ (matrix.os == 'ubuntu-latest') }} | |
| with: | |
| images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }} | |
| tags: | | |
| type=raw,value=${{ env.SEMVER }} | |
| type=raw,value=latest,enable=${{ endsWith(github.ref, github.event.repository.default_branch) }} | |
| - name: Build and push Docker image | |
| uses: docker/[email protected] | |
| if: ${{ (matrix.os == 'ubuntu-latest') }} | |
| with: | |
| context: . | |
| push: ${{ github.event_name != 'pull_request' }} | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| - name: Scan image with Azure Container Scan | |
| env: | |
| TRIVY_TIMEOUT_SEC: 360s | |
| uses: Azure/[email protected] | |
| if: ${{ (matrix.os == 'ubuntu-latest') }} | |
| with: | |
| image-name: ${{ fromJSON(steps.meta.outputs.json).tags[0] }} | |
| - name: Anchore container scan | |
| id: anchore-scan | |
| uses: anchore/[email protected] | |
| if: ${{ (matrix.os == 'ubuntu-latest') }} | |
| with: | |
| image: ${{ fromJSON(steps.meta.outputs.json).tags[0] }} | |
| fail-build: true | |
| severity-cutoff: critical | |
| - name: Upload Anchore scan SARIF report | |
| uses: github/codeql-action/upload-sarif@v2 | |
| if: ${{ (matrix.os == 'ubuntu-latest') }} | |
| with: | |
| sarif_file: ${{ steps.anchore-scan.outputs.sarif }} | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Output | |
| id: output | |
| if: ${{ (matrix.os == 'ubuntu-latest') }} | |
| run: echo "::set-output name=${{ matrix.os }}-TAG::${{ fromJSON(steps.meta.outputs.json).labels['org.opencontainers.image.version'] }}" | |
| docs: | |
| runs-on: windows-latest | |
| needs: [calc-version] | |
| env: | |
| SEMVER: ${{ needs.calc-version.outputs.semVer }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-dotnet@v3 | |
| with: | |
| dotnet-version: "6.0.x" | |
| - name: Enable NuGet cache | |
| uses: actions/[email protected] | |
| with: | |
| path: ~/.nuget/packages | |
| key: ${{ runner.os }}-nuget-${{ hashFiles('**/packages.lock.json') }} | |
| restore-keys: | | |
| ${{ runner.os }}-nuget | |
| - name: Setup DocFX | |
| uses: crazy-max/ghaction-chocolatey@v2 | |
| with: | |
| args: install docfx | |
| - name: Restore dependencies | |
| run: dotnet restore | |
| working-directory: ./src | |
| - name: Build Solution | |
| run: dotnet build -c ${{ env.BUILD_CONFIG }} --nologo ${{ env.SOLUTION }} | |
| working-directory: ./src | |
| - name: Update docs version | |
| run: | | |
| sed -i -e "s,v0.0.0,v${{ env.SEMVER }},g" ./docs/docfx.json | |
| sed -i -e "s,v0.0.0,v${{ env.SEMVER }},g" ./docs/index.md | |
| - name: Build Docs | |
| working-directory: docs | |
| run: docfx docfx.json | |
| continue-on-error: false | |
| - name: Package docs | |
| run: | | |
| mkdir ~\release | |
| Compress-Archive -Path docs\_site\* -DestinationPath ~\release\mig-docs-${{ env.SEMVER }}.zip | |
| Get-ChildItem ~\release -Recurse | |
| - name: Upload docs | |
| uses: actions/[email protected] | |
| with: | |
| name: artifacts | |
| path: ~/release | |
| retention-days: 7 | |
| release: | |
| if: ${{ contains(github.ref, 'refs/heads/main') || contains(github.ref, 'refs/heads/develop') ||contains(github.head_ref, 'release/') || contains(github.head_ref, 'feature/') || contains(github.head_ref, 'develop') }} | |
| runs-on: ubuntu-latest | |
| needs: [calc-version, unit-test, docs, integration-test, analyze] | |
| env: | |
| SEMVER: ${{ needs.calc-version.outputs.semVer }} | |
| PRERELEASELABEL: ${{ needs.calc-version.outputs.preReleaseLabel }} | |
| MAJORMINORPATCH: ${{ needs.calc-version.outputs.majorMinorPatch }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/download-artifact@v3 | |
| id: download | |
| - name: List artifacts | |
| run: ls -ldR ${{steps.download.outputs.download-path}}/**/* | |
| - name: Extract owner and repo | |
| uses: jungwinter/split@v2 | |
| id: repo | |
| with: | |
| separator: "/" | |
| msg: ${{ github.repository }} | |
| - name: Install GitReleaseManager | |
| uses: gittools/actions/gitreleasemanager/[email protected] | |
| with: | |
| versionSpec: "0.13.x" | |
| - name: Create release with GitReleaseManager | |
| uses: gittools/actions/gitreleasemanager/[email protected] | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| owner: ${{ steps.repo.outputs._0 }} | |
| repository: ${{ steps.repo.outputs._1 }} | |
| milestone: ${{ env.MAJORMINORPATCH }} | |
| name: "Release v${{ env.MAJORMINORPATCH }}" | |
| assets: | | |
| artifacts/mig-cli-${{ env.SEMVER }}-linux-x64.zip | |
| artifacts/mig-cli-${{ env.SEMVER }}-win-x64.zip | |
| artifacts/mig-docs-${{ env.SEMVER }}.zip | |
| - name: Publish release with GitReleaseManager | |
| uses: gittools/actions/gitreleasemanager/[email protected] | |
| if: ${{ contains(github.ref, 'refs/heads/main') }} | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| owner: ${{ steps.repo.outputs._0 }} | |
| repository: ${{ steps.repo.outputs._1 }} | |
| tagName: ${{ env.MAJORMINORPATCH }} | |
| - name: Close release with GitReleaseManager | |
| uses: gittools/actions/gitreleasemanager/[email protected] | |
| if: ${{ contains(github.ref, 'refs/heads/main') }} | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| owner: ${{ steps.repo.outputs._0 }} | |
| repository: ${{ steps.repo.outputs._1 }} | |
| milestone: ${{ env.MAJORMINORPATCH }} | |
| - name: Unzip docs | |
| if: ${{ contains(github.ref, 'refs/heads/main') }} | |
| run: | | |
| mkdir userguide | |
| unzip artifacts/mig-docs-${{ env.SEMVER }}.zip -d userguide/ | |
| ls -lR userguide/ | |
| - name: Deploy Docs | |
| uses: peaceiris/actions-gh-pages@v3 | |
| if: ${{ contains(github.ref, 'refs/heads/main') }} | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: userguide/ | |
| publish_branch: docs |