Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update pybids requirement from <=0.16.4 to <=0.16.5 #315

Merged
merged 1 commit into from
Jun 4, 2024

Conversation

dependabot[bot]
Copy link
Contributor

@dependabot dependabot bot commented on behalf of github May 27, 2024

Updates the requirements on pybids to permit the latest version.

Release notes

Sourced from pybids's releases.

0.16.5

DOI

Release notes

Bug-fix release in the 0.16.x series.

This release includes minor fixes, but reworks the testing infrastructure and resolves Python 3.12 incompatibilities.

What's Changed

  • FIX: Handle FileNotFoundError in BIDSLayout init when is_derivative=True and validate=False (#1049)
  • FIX: Add dwi root sbref, missing dwi entities to path patterns (#1059)
  • ENH: Update indexer to treat .zarr as files not dirs (#1046)
  • DOC: Deal with several warnings and errors in the doc build (#1061)
  • TST: Add bids-examples tests to cover ieeg, eeg, dwi (#1060)
  • MNT: Add Python 3.12 support (#1057)
  • MNT: Use tox to simplify testing environment setup (#1055)
  • MNT: Bump codecov/codecov-action from 3 to 4 (#1041)
  • MNT: Bump bids-examples from 1a000d6 to eff47f1 (#1039)
  • MNT: Bump bids-examples from b6e5234 to 1a000d6 (#1038)
  • MNT: Bump actions/upload-artifact from 3 to 4 (#1037)
  • MNT: Bump actions/setup-python from 4 to 5 (#1036)

New Contributors

Full Changelog: bids-standard/pybids@0.16.4...0.16.5

Changelog

Sourced from pybids's changelog.

Version 0.16.5 (May 22, 2024)

Bug-fix release in the 0.16.x series.

This release includes minor fixes, but reworks the testing infrastructure and resolves Python 3.12 incompatibilities.

  • FIX: Handle FileNotFoundError in BIDSLayout init when is_derivative=True and validate=False (#1049)
  • FIX: Add dwi root sbref, missing dwi entities to path patterns (#1059)
  • ENH: Update indexer to treat .zarr as files not dirs (#1046)
  • DOC: Deal with several warnings and errors in the doc build (#1061)
  • TST: Add bids-examples tests to cover ieeg, eeg, dwi (#1060)
  • MNT: Add Python 3.12 support (#1057)
  • MNT: Use tox to simplify testing environment setup (#1055)
  • MNT: Bump codecov/codecov-action from 3 to 4 (#1041)
  • MNT: Bump bids-examples from 1a000d6 to eff47f1 (#1039)
  • MNT: Bump bids-examples from b6e5234 to 1a000d6 (#1038)
  • MNT: Bump actions/upload-artifact from 3 to 4 (#1037)
  • MNT: Bump actions/setup-python from 4 to 5 (#1036)

Version 0.16.4 (November 30, 2023)

Bug-fix release in the 0.16.x series.

This release resolves a bug likely introduced in 0.9.0 (when PyBIDS started using SQL), in which boolean metadata fields with values of False were read in as True.

  • FIX: Ensure values of boolean metadata fields are preserved (#1034)
  • FIX: update config for PET tracer entity (#1018)
  • ENH: Clearer BIDSValidation error message (#1023)
  • STY: pacify codespell (#1029)
  • CI: Build(deps): Bump bids-examples from 064db11 to b6e5234 (#1031)
  • CI: Build(deps): Bump bids-examples from d039879 to 064db11 (#1028)
  • CI: Build(deps): Bump bids-examples from bfcc5c6 to d039879 (#1027)
  • CI: Bump bids-examples from 502c917 to bfcc5c6 (#1026)
  • CI: Bump bids-examples from 1c30c6e to 502c917 (#1025)
  • CI: Bump bids-examples from e857597 to 1c30c6e (#1021)
  • CI: Bump bids-examples from c557d1f to e857597 (#1019)
  • CI: Bump bids-examples from 75968b9 to c557d1f (#1011)
  • CI: Bump actions/checkout from 3 to 4 (#1024)

Version 0.16.3 (August 16, 2023)

Bug-fix release in the 0.16.x series.

... (truncated)

Commits
  • 7796c63 Merge pull request #1064 from bids-standard/rel/0.16.5
  • c744cec chore(test-pypi): Avoid failures on duplicate commit counts
  • 7b1f451 doc(changes): 0.16.5 release notes
  • 1220667 chore(zenodo): Update Zenodo file
  • ba4d0ac chore(mailmap): Add Basile Pinsard
  • 20007e5 Merge pull request #1057 from effigies/mnt/py312
  • ec017e7 CI: Run tests on Python 3.12
  • 4f1a161 FIX: Avoid rounding up for very small epsilons
  • 16c551a MNT: Use jinja2 PackageLoader instead of pkg_resources
  • 87eecc5 Merge pull request #1049 from alperkent/master
  • Additional commits viewable in compare view

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.


Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

  • @dependabot rebase will rebase this PR
  • @dependabot recreate will recreate this PR, overwriting any edits that have been made to it
  • @dependabot merge will merge this PR after your CI passes on it
  • @dependabot squash and merge will squash and merge this PR after your CI passes on it
  • @dependabot cancel merge will cancel a previously requested merge and block automerging
  • @dependabot reopen will reopen this PR if it is closed
  • @dependabot close will close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually
  • @dependabot show <dependency name> ignore conditions will show all of the ignore conditions of the specified dependency
  • @dependabot ignore this major version will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this minor version will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)

@codecov-commenter
Copy link

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 62.13%. Comparing base (fac7380) to head (fe991ea).

Additional details and impacted files
@@           Coverage Diff           @@
##             main     #315   +/-   ##
=======================================
  Coverage   62.13%   62.13%           
=======================================
  Files           9        9           
  Lines        1582     1582           
=======================================
  Hits          983      983           
  Misses        599      599           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@tsalo
Copy link
Member

tsalo commented Jun 4, 2024

@dependabot rebase

Updates the requirements on [pybids](https://github.com/bids-standard/pybids) to permit the latest version.
- [Release notes](https://github.com/bids-standard/pybids/releases)
- [Changelog](https://github.com/bids-standard/pybids/blob/master/CHANGELOG.rst)
- [Commits](bids-standard/pybids@0.0.1...0.16.5)

---
updated-dependencies:
- dependency-name: pybids
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot force-pushed the dependabot/pip/pybids-lte-0.16.5 branch from fe991ea to 540ce52 Compare June 4, 2024 15:04
@tsalo tsalo merged commit 23f2f13 into main Jun 4, 2024
9 checks passed
@dependabot dependabot bot deleted the dependabot/pip/pybids-lte-0.16.5 branch June 4, 2024 15:10
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants