fix(impute_missing): record NA dates before reindexing, not after #295
Workflow file for this run
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| name: cwa | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| jobs: | |
| prepare-artifacts: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.8" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -e . # install as editable to locate the torch hub cache more easily | |
| - name: Download test files | |
| run: | | |
| wget https://wearables-files.ndph.ox.ac.uk/files/data/samples/mini-sample.csv.gz --quiet | |
| wget https://wearables-files.ndph.ox.ac.uk/files/data/samples/ax3/tiny-sample.cwa.gz --quiet | |
| # Perform a run to cache the torch hub repo and download the model files (SSL) | |
| - name: Smoke test | |
| run: stepcount mini-sample.csv.gz | |
| # Perform a run to download the model files (RF) | |
| - name: Smoke test (RF) | |
| run: stepcount mini-sample.csv.gz -t rf | |
| - name: Upload test files | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: test-files | |
| path: | | |
| mini-sample.csv.gz | |
| tiny-sample.cwa.gz | |
| - name: Upload model joblib files | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: model-files | |
| path: src/stepcount/*.joblib.lzma # our model files have the extension .joblib.lzma | |
| - name: Upload torch_hub_cache | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: torch_hub_cache | |
| path: src/stepcount/torch_hub_cache | |
| cwa: | |
| needs: prepare-artifacts | |
| runs-on: ${{matrix.os}} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: ["3.8", "3.9", "3.10"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Setup Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -e . # install as editable to locate the torch hub cache more easily | |
| - name: Download test files | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: test-files | |
| - name: Download model files | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: model-files | |
| path: src/stepcount | |
| - name: Download torch_hub_cache | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: torch_hub_cache | |
| path: src/stepcount/torch_hub_cache | |
| - name: Smoke test, mini-sample.csv.gz | |
| run: stepcount mini-sample.csv.gz | |
| - name: Smoke test, tiny-sample.cwa.gz | |
| run: stepcount tiny-sample.cwa.gz | |
| - name: Smoke test, mini-sample.csv.gz (RF) | |
| run: stepcount mini-sample.csv.gz -t rf | |
| - name: Smoke test, tiny-sample.cwa.gz (RF) | |
| run: stepcount tiny-sample.cwa.gz -t rf |