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Basic documentation of CWL export feature
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mr-c committed Jun 21, 2024
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7 changes: 7 additions & 0 deletions docs/about/installation.rst
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Expand Up @@ -35,6 +35,10 @@ workflow systems designed to make workflow creation and maintenance more fun, fi
:target: ../getting-started/toppas-get-started.html
:width: 90%

- .. image:: /_images/introduction/CWL-4k.png
:target: ../getting-started/cwl-get-started.html
:width: 90%


.. list-table::
:widths: 25 25 25 25
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:target: ../getting-started/toppas-get-started.html
:width: 90%

- .. image:: /_images/introduction/CWL-4k.png
:target: ../getting-started/cwl-get-started.html
:width: 90%

Graphical and Command-Line Tools
--------------------------------
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10 changes: 10 additions & 0 deletions docs/getting-started/cwl-get-started.md
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Common Workflow Language
========================

The Common Workflow Language is a set of free and open standards for describing
command-line tool and workflows made from those tool descriptions.

Every OpenMS tool from version 3.2 onwards can self-generate a CWL tool description
using the `-write_cwl` option.

For example: `PeakPickerHiRes -write_cwl PeakPickerHiRes.cwl`
19 changes: 19 additions & 0 deletions docs/getting-started/workflows.rst
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Expand Up @@ -101,6 +101,25 @@ workflow systems designed to make workflow creation and maintenance more fun:

OpenMS' build-in workflow system, with limited capabilities but easy to use and tailored to TOPP tools.

.. grid-item-card:: CWL
:img-top: /_images/introduction/CWL-4K.png
:link: /getting-started/cwl-get-started
:link-type: doc
:class-card: only-light
:class-img-top: halfwidth
:columns: 12

The Common Workflow Language standards are automatically supported by every OpenMS tool from version 3.2 and onwards.

.. grid-item-card:: CWL
:img-top: /_images/introduction/CWL-4K.png
:link: /getting-started/cwl-get-started
:link-type: doc
:class-card: only-dark
:class-img-top: halfwidth
:columns: 12

The Common Workflow Language standards are automatically supported by every OpenMS tool from version 3.2 and onwards.

.. toctree::
:maxdepth: 1
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