All code used to analyse data and prepare figures for Stuart, O. et al. (2024) "Gene flow stimulates recovery of reproductive fitness in a captive bred insect." Insect Conservation and Diversity.
The code is contained in the "Analysis" folder and is divided into two .Rmd files.
LHISI_Phenotype_Data_Cleaning.Rmd: here I make some quick summaries of the phenotypic measurements taken from ZIMS and clean any obvious errors. This script generates the input file for the next.Rmdfile:Data/cleaned_phenotype_data.Rdatawhich is included in this repositoryLHISI_Phenotype_Data_Modelling.Rmd: all actual modelling and plotting goes here.
The raw data used as input for LHISI_Phenotype_Data_Cleaning.Rmd is available on request: [email protected]