[CCSD Test] remove unnecessary memcpy #998
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| name: TAMM_CI | |
| on: | |
| push: | |
| paths-ignore: | |
| - docs | |
| pull_request: | |
| branches: | |
| - main | |
| - develop | |
| repository_dispatch: | |
| types: [backend_automation] | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-22.04] | |
| backend: | |
| - ga | |
| - upcxx | |
| mpi_impl: | |
| - openmpi | |
| cxx: | |
| - g++-10 | |
| cc: | |
| - gcc-10 | |
| fc: | |
| - gfortran-10 | |
| include: | |
| - os: ubuntu-22.04 | |
| mpi_impl: openmpi | |
| cxx: g++-10 | |
| cc: gcc-10 | |
| fc: gfortran-10 | |
| backend: ga | |
| - os: ubuntu-22.04 | |
| mpi_impl: openmpi | |
| cxx: g++-11 | |
| cc: gcc-11 | |
| fc: gfortran-11 | |
| backend: ga | |
| - os: ubuntu-22.04 | |
| mpi_impl: openmpi | |
| cxx: clang++-11 | |
| cc: clang-11 | |
| fc: gfortran-10 | |
| backend: ga | |
| - os: ubuntu-22.04 | |
| mpi_impl: openmpi | |
| cxx: g++-11 | |
| cc: gcc-11 | |
| fc: gfortran-11 | |
| backend: upcxx | |
| exclude: | |
| - os: ubuntu-22.04 | |
| mpi_impl: openmpi | |
| cxx: g++-9 | |
| cc: gcc-9 | |
| fc: gfortran-9 | |
| backend: upcxx | |
| - os: ubuntu-22.04 | |
| mpi_impl: openmpi | |
| cxx: g++-10 | |
| cc: gcc-10 | |
| fc: gfortran-10 | |
| backend: upcxx | |
| fail-fast: true | |
| env: | |
| MPI_IMPL: ${{ matrix.mpi_impl }} | |
| CXX: ${{ matrix.cxx }} | |
| CC: ${{ matrix.cc }} | |
| FC: ${{ matrix.fc }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.x' | |
| - name: Check SIMD | |
| id: get-simd | |
| run: | | |
| chmod +x ${GITHUB_WORKSPACE}/.github/workflows/scripts/check_simd.sh | |
| echo "simd=$(${GITHUB_WORKSPACE}/.github/workflows/scripts/check_simd.sh)" >> $GITHUB_ENV | |
| shell: bash | |
| - name: Cache install steps (backend = ga) | |
| if: ${{ matrix.backend == 'ga' }} | |
| id: tamm-cache-install | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ~/tamm_cache | |
| key: ${{ runner.os }}-${{ matrix.mpi_impl }}-${{ matrix.cc }}-${{ matrix.cxx }}-simd${{ env.simd }}-tamm | |
| - name: Cache install steps (backend = upcxx) | |
| if: ${{ matrix.backend == 'upcxx' }} | |
| id: tamm-upcxx-cache-install | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ~/tamm_cache | |
| key: ${{ runner.os }}-${{ matrix.mpi_impl }}-${{ matrix.cc }}-${{ matrix.cxx }}-simd${{ env.simd }}-tamm-upcxx | |
| - name: install compilers | |
| run: | | |
| sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test | |
| sudo apt-get update | |
| sudo apt-get -y install $CC $CXX $FC | |
| $CC --version | |
| $CXX --version | |
| $FC --version | |
| gcov --version | |
| git --version | |
| python --version | |
| shell: bash | |
| - name: get-misc | |
| run: sudo apt-get install make wget curl rsync tree software-properties-common libxml2-dev libxslt-dev | |
| - name: get-blas-lapack | |
| run: sudo apt-get install libopenblas-base libopenblas-dev libgslcblas0 libgsl-dev liblapacke liblapacke-dev | |
| - name: get-openmpi | |
| run: | | |
| sudo apt-get install openmpi-bin libopenmpi-dev | |
| mpicc -show | |
| mpifort -show | |
| mpicxx -show | |
| mpiexec --version | |
| - name: get-gcovr | |
| run: pip install gcovr | |
| - name: get-cmake | |
| run: | | |
| wget https://github.com/Kitware/CMake/releases/download/v3.22.6/cmake-3.22.6-linux-x86_64.sh | |
| yes | /bin/sh cmake-3.22.6-linux-x86_64.sh | |
| - name: build upcxx | |
| if: ${{ matrix.backend == 'upcxx' && steps.tamm-upcxx-cache-install.outputs.cache-hit != 'true' }} | |
| shell: bash | |
| run: | | |
| mkdir -p $GITHUB_WORKSPACE/external_deps | |
| cd $GITHUB_WORKSPACE/external_deps | |
| wget https://bitbucket.org/berkeleylab/upcxx/downloads/upcxx-2023.3.0.tar.gz | |
| tar xf upcxx-2023.3.0.tar.gz | |
| cd upcxx-2023.3.0 | |
| export INSTALL_PATH=$GITHUB_WORKSPACE/install | |
| ./configure --prefix=${INSTALL_PATH} --with-cxx=mpicxx --with-cc=mpicc --with-default-network=smp | |
| make -j2 all | |
| make install | |
| - name: find cache | |
| id: find_cache | |
| if: ${{ steps.tamm-cache-install.outputs.cache-hit == 'true' || steps.tamm-upcxx-cache-install.outputs.cache-hit == 'true' }} | |
| run: | | |
| export INSTALL_PATH=$GITHUB_WORKSPACE/install | |
| pwd | |
| ls -lart | |
| mkdir -p ${INSTALL_PATH} ~/tamm_cache || true | |
| export TIP=~/tamm_cache/ | |
| rm -rf $TIP/share/cmake/tamm $TIP/lib/libtamm* $TIP/include/tamm $TIP/share/cmake/CMakeBuild | |
| rsync -av ~/tamm_cache/* ${INSTALL_PATH}/. | |
| ls -lrt ${INSTALL_PATH} || true | |
| - name: enable coverage | |
| if: ${{ matrix.backend == 'ga' && matrix.cc != 'clang-11' && matrix.cc != 'gcc-11' }} | |
| run: | | |
| echo "CI_COVERAGE=ON" >> $GITHUB_ENV | |
| - name: build tamm (backend = ga) | |
| if: ${{ matrix.backend == 'ga' }} | |
| id: build_tamm | |
| run: | | |
| export INSTALL_PATH=$GITHUB_WORKSPACE/install | |
| export CPATH=$CPATH:$INSTALL_PATH/include/eigen3 | |
| $GITHUB_WORKSPACE/cmake-3.22.6-linux-x86_64/bin/cmake -H. -Bbuild -DCMAKE_INSTALL_PREFIX=$INSTALL_PATH -DENABLE_COVERAGE=${{ env.CI_COVERAGE }} | |
| cd build | |
| make -j2 | |
| make install | |
| mkdir -p ~/tamm_cache || true | |
| rsync -av --exclude="*tamm*" ${INSTALL_PATH}/* ~/tamm_cache/. | |
| - name: build tamm (backend = upcxx) | |
| if: ${{ matrix.backend == 'upcxx' }} | |
| id: build_tamm_upcxx | |
| run: | | |
| export INSTALL_PATH=$GITHUB_WORKSPACE/install | |
| export PATH=$PATH:$GITHUB_WORKSPACE/install/bin | |
| upcxx --version | |
| export CPATH=$CPATH:/usr/lib/x86_64-linux-gnu/openmpi/include | |
| export CPATH=$CPATH:$INSTALL_PATH/include/eigen3 | |
| echo "UPCXX_SHARED_HEAP_SIZE=MAX" >> $GITHUB_ENV | |
| UPCXX_CODEMODE=O3 CXX=upcxx $GITHUB_WORKSPACE/cmake-3.22.6-linux-x86_64/bin/cmake -H. -Bbuild -DCMAKE_INSTALL_PREFIX=$INSTALL_PATH -DUSE_UPCXX=ON -DJOB_LAUNCH_CMD="upcxx-run" | |
| cd build | |
| UPCXX_CODEMODE=O3 make -j2 | |
| UPCXX_CODEMODE=O3 make install | |
| mkdir -p ~/tamm_cache || true | |
| rsync -av --exclude="*tamm*" ${INSTALL_PATH}/* ~/tamm_cache/. | |
| - name: ctest | |
| run: | | |
| cd $GITHUB_WORKSPACE/build | |
| export PATH=$PATH:$GITHUB_WORKSPACE/install/bin | |
| $GITHUB_WORKSPACE/cmake-3.22.6-linux-x86_64/bin/ctest -VV | |
| - name: gcovr | |
| if: ${{ matrix.backend == 'ga' && matrix.cc != 'clang-11' && matrix.cc != 'gcc-11' }} | |
| run: | | |
| cd $GITHUB_WORKSPACE/build | |
| gcovr --root ./stage/$INSTALL_PATH . --xml ../coverage.xml | |
| ls -al . | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| file: ./coverage.xml |