update requirements for black to adress security issue #74
Workflow file for this run
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| name: PINNSTRIPES-CI | |
| on: | |
| push: | |
| branches: [main] | |
| paths-ignore: | |
| - '*.md' | |
| - 'README*' | |
| - 'LICENSE' | |
| pull_request: | |
| branches: [main] | |
| paths-ignore: | |
| - '*.md' | |
| - 'README*' | |
| - 'LICENSE' | |
| jobs: | |
| Lint: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.10'] | |
| defaults: | |
| run: | |
| working-directory: ${{github.workspace}} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{matrix.python-version}} | |
| - name: Install formatting dependencies | |
| run: | | |
| pip install black | |
| pip install isort | |
| pip install codespell | |
| - name: Formatting | |
| run: | | |
| source .github/linters/formatting.sh | |
| format pinn_spm_param true | |
| format BayesianCalibration_spm true | |
| codespell | |
| Test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.10'] | |
| defaults: | |
| run: | |
| working-directory: ${{github.workspace}} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{matrix.python-version}} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install pytest | |
| python -m pip install -r requirements.txt | |
| - name: Test SPM preprocess | |
| run: | | |
| cd pinn_spm_param/integration_spm | |
| python main.py -nosimp -opt -lean | |
| cd ../preProcess | |
| python makeDataset_spm.py -nosimp -df ../integration_spm -frt 1 | |
| - name: Test SPM | |
| run: | | |
| cd pinn_spm_param/tests | |
| pytest -v test_spm.py | |
| - name: Test SPM post process | |
| run: | | |
| cd pinn_spm_param/tests | |
| pytest -v test_spm_postProc.py | |
| - name: Test SPM utils | |
| run: | | |
| pip install black | |
| cd pinn_spm_param/tests | |
| pytest -v test_spm_utils.py | |
| - name: Test SPM Bayesian calibration | |
| run: | | |
| cp pinn_spm_param/integration_spm/solution.npz pinn_spm_param/integration_spm/solution_0.5_1.npz | |
| cd BayesianCalibration_spm | |
| bash exec_test.sh |