Hydrofabric (v 2.0) support

This version supports use of the hydrofabric release v2.0.

Additional features and functionalities added, and code refactoring and cleanup are also included in this pre-release version.

What's Changed

• Increase and allow configurability of precision in output from BMI formulations by @robertbartel in #344
• Fixed image for test model run by @ZacharyWills in #378
• Quiet option fix by @hellkite500 in #376
• Fix workflow failure from wrong python version by @mattw-nws in #379
• validate number of aorc columns before reading. fixes #372 by @hellkite500 in #373
• update external submodule to noah-owp-modular by @SnowHydrology in #382
• Added SOURCE_LOC macro by @mattw-nws in #388
• C++ BMI Module Integration by @mattw-nws in #343
• precip_rate now computed using the right unit of temperature by @hellkite500 in #389
• require c99 standard compiler to build cfe and topmodel libs by @madMatchstick in #391
• Fix 384, prioritize use of BMI potential evapotranspiration by @hellkite500 in #387
• Fix 393 by @hellkite500 in #394
• Setting up environment for Evapotranspiration submodule in ngen by @stcui007 in #383
• Bmi parameter initialization integration by @hellkite500 in #368
• Support look-back for nest BMI module input values and bootstrapping of defaults. by @robertbartel in #346
• bump t-route submodule commit to include bugfixes by @hellkite500 in #399
• GCC 11 fixes by @mattw-nws in #397
• Gitpod env files by @mattw-nws in #398
• Update INSTALL.md for #281 by @ZacharyWills in #363
• disable waterbody execution in pybind/troute test by @hellkite500 in #400
• Fix t-route test failure when cache is used by @hellkite500 in #402
• Fix a build error when Python is turned off by @stcui007 in #404
• Github action/workflow cleanup and refactor by @hellkite500 in #407
• allow the use of "all" to define catchment and nexus subsets by @hellkite500 in #409
• Improve action reliability: try --fix-missing as error suggests by @mattw-nws in #414
• Add SoilMoistureProfile and SoilFreeThaw as git submodule in ngen ext… by @champham in #412
• Unfied forcing rebase by @donaldwj in #406
• Fix output_variables by @mattw-nws in #415
• Adds pthreads dependency for UnitsHelper by @mattw-nws in #419
• Bmi array support by @hellkite500 in #405
• Optimize unit conversion by reusing cv_converters by @mattw-nws in #420
• Set tag to rockylinux:8 explicitly by @mattw-nws in #423
• Netcdf lumped usable by @mattw-nws in #417
• MPI Broadcast Call Bugfix by @mattw-nws in #424
• Change default forcing provider to CsvPerFeature, deprecate Forcing class by @mattw-nws in #426
• LRU Caching for NetCDF lumped format timeslice chunks by @mattw-nws in #421
• Added Python BMI docs by @mattw-nws in #427
• Deal with shared lib file not found failures due to OS file extension mismatch by @mattw-nws in #430
• Add tests for PET BMI module (replaces PR#401) by @stcui007 in #429
• Update t-route submod commit by @hellkite500 in #434
• Adding SLoTH as a default module in extern by @mattw-nws in #433
• Fix NetCDFPerFeatureDataProvider returning the same forcing for all catchments by @mattw-nws in #437
• Remove deprecated Forcing class dependency from legacy formulations by @stcui007 in #432
• Unit Conversion and Logging Tuneup by @mattw-nws in #438
• Partition optimization by @hellkite500 in #443
• Refactor forcing and data provider by @stcui007 in #446
• gcc-12 namespace fixes by @hellkite500 in #447
• ajk/cfe modifications by @ajkhattak in #448
• Correct minor automated test errors in introduced in #448 by @mattw-nws in #454
• Fix typo that would prevent file with units=hours from functioning … by @mattw-nws in #452
• Update INSTALL.md by @christophertubbs in #455
• Geojson optimization by @hellkite500 in #444
• Fix macOS runners - add netcdf-cxx and netcdf-fortran package to brew install by @mattw-nws in #458
• Fix a smattering of errors and warnings with newer compilers by @mattw-nws in #461
• Fix for #453 by @stcui007 in #460
• explicitly import iostream for print message in routing adapter by @hellkite500 in #469
• update to pybind 2.10.1 by @hellkite500 in #468
• Interim Fix Issue #451 by @mattw-nws in #457
• Update Noah to 9ede266 by @mattw-nws in #465
• Fix python segfaults by @hellkite500 in #470
• Refactor BMI model GetValue() function by @stcui007 in #467
• Build info and python runtime info by @mattw-nws in #476
• Set restriction on the number of partitions in partition generator by @stcui007 in #474
• Guard interpreter util by @stcui007 in #478
• Update github action set-output to use new environment file by @stcui007 in #479
• Fix Partition reading empty list for remote connections by @hellkite500 in #475
• remove some debug noise that pops up in the output by @hellkite500 in #471
• Update CFE to latest master by @mattw-nws in #483
• Passing catchment id to CatchmentAggrDataSelector by @stcui007 in #480
• Basic fix to make sure NetCDF files get closed by @mattw-nws in #485
• Fixing a minor bug - issue #449. by @stcui007 in #487
• Modify Formulation_Manager.hpp to parse forcing "file_pattern" by @stcui007 in #489
• Update iso c binding library, replace PR#490 by @stcui007 in #491
• dendridic|DENDRIDIC --> dendritic by @jameshalgren in #494
• Intel compiler support by @mattw-nws in #499
• Replace "move()" with "std::move()" in ngen code by @stcui007 in #500
• Handle windows CSV files on Linux by @mattw-nws in #501
• Changes to integrate t-route master branch by @mattw-nws in #502
• Updating iso_c__fortran_bmi by @stcui007 in #503
• Python bmi grid by @hellkite500 in #493
• fix t-route module build to install numpy by @hellkite500 in #516
• String passing fixes by @donaldwj in #520
• Fix potential char overflow bug by @hellkite500 in #515
• Test cleanup by @hellkite500 in #519
• Implement proper handling of dirent in FormulationManager, fixes #517 by @hellkite500 in #518
• Fixing test_routing_pybind workflow failures by @mattw-nws in #528
• Add stdexcept include to UnitsHelper header by @program-- in #524
• Implement bracketed unit parsing in forcing CSV headers by @program-- in #511
• Fortran bmi grid by @hellkite500 in #508
• t-route (master branch) docs update by @mattw-nws in #506
• Pin pyarrow to avoid crash in 12.x by @mattw-nws in #542
• Handle non-existent module filename extension reliably by @mattw-nws in #543
• Remove heuristics for finding Python and NumPy in favor of baseline find_package by @PhilMiller in #540
• Fix ASan-reported errors in Fortran BMI testing by @PhilMiller in #548
• #539: Fix ASAN-triggers in GIUH testing by @PhilMiller in #553
• Broadcast scalar input variable values to expected array structure by @PhilMiller in #556
• Remove defunct GCC 4.8 support by @PhilMiller in #560
• #362: Remove repeated searches for Boost that were picking up mixed versions by @PhilMiller in #564
• Compare Python & NumPy versions from configure/build time to runtime by @PhilMiller in #558
• GeoPackage input support by @program-- in #522
• Fix compiler guards in multi bmi tests (fixes #578) by @hellkite500 in #579
• #559: Import definitions of data() and span() from Boost Core by @PhilMiller in #576
• Use span to avoid copying WKB geometry data by @PhilMiller in #583
• #536: Add AddressSanitizer flags to CI tests by @PhilMiller in #580
• Shift UDUNITS to solely external installation by @PhilMiller in #561
• Correct typo in function name avaliable -> available by @PhilMiller in #589
• CMake: Delete dead code by @PhilMiller in #584
• Only fiddle with BOOST_ROOT if it's not been set naturally by @PhilMiller in #591
• Add support for a user-specified root output directory by @program-- in #531
• Refactor tests to remove dependencies on internal models by @mattw-nws in #594
• Remove Hymod and Simple_Lumped by @mattw-nws in #595
• Removes top-level tshirt models by @mattw-nws in #597
• Try updating Github action to v3, since v2 was long-since deprecated by @PhilMiller in #607
• Remove hunting for Python venv in working directory and parents by @PhilMiller in #592
• Remove giuh and reservoir kernels by @mattw-nws in #598
• Remove et_calc and pdm03 by @mattw-nws in #599
• Strictly follow C++14 standard by @PhilMiller in #606
• Disable t-route integration test on macOS, see #505 by @mattw-nws in #611
• Fix a bug in output variable name list, replacing (PR#577) by @stcui007 in #610
• Drown using namespace std by @PhilMiller in #603
• In-memory, multi-dimensional structure by @program-- in #533
• Use safer string functions by @stcui007 in #616
• Tests and cleanup for #610 (output_variables fallback behavior) by @mattw-nws in #613
• Allow passing feature properties to BMI models through model_params by @program-- in #588
• Remove native/internal LSTM model by @mattw-nws in #600
• Bug fix mpi compile by @TrupeshKumarPatel in #620
• Fix a couple more missing std:: found with grep by @PhilMiller in #622
• Fix using the forcing file header error. by @stcui007 in #624
• Modify CMake-Python config interaction and add config summary output by @program-- in #626
• Add documentation for model_params, output_variables, and output_header_fields by @program-- in #623
• Remove custom time unit conversion in favor of UDUNITS by @stcui007 in #633
• Fix a missing "std::" in NGen.cpp for make_unique pointer involving r… by @stcui007 in #636
• GeoPackage divide_id attribute hotfix by @mattw-nws in #625
• Work around GCC8's failure to properly parse initializer list literals by @PhilMiller in #642
• NetCDFPerFeatureForcingProvider split implementation by @mattw-nws in #641
• Initial CMake Refactoring by @program-- in #631
• Refactor and clean up partition generator by @PhilMiller in #609
• Enable Python Support by Default by @program-- in #645
• Null/Constant Forcing Provider by @stcui007 in #601
• Refactor get_available_variable_names to return a span rather than a concrete vector by @PhilMiller in #644
• Replace unused boost/bind.hpp with std's by @PhilMiller in #648
• Update test routing config to alleviate pydantic errors by @program-- in #654
• Set CMake NetCDF support to default to OFF by @program-- in #653
• Implement a logging function by @stcui007 in #643
• Multi level hydrofabric by @donaldwj in #615
• Bmi conventions doc by @mattw-nws in #507
• Hydrofabric refactor to support latest hydrofabric data model by @hellkite500 in #665
• Test Cleanup by @hellkite500 in #666
• Partiton tool with geopackage by @hellkite500 in #671
• refactor bmi adapters into their own library by @hellkite500 in #672
• Sqlite null fix by @hellkite500 in #673
• Fix HY_Features_MPI to match feature-type behavior of HY_Features from PR #665 by @PhilMiller in #674
• Minor GPKG/SQLite Reorganization by @program-- in #670

New Contributors

• @SnowHydrology made their first contribution in #382
• @champham made their first contribution in #412
• @ajkhattak made their first contribution in #448
• @jameshalgren made their first contribution in #494
• @program-- made their first contribution in #524
• @PhilMiller made their first contribution in #540
• @TrupeshKumarPatel made their first contribution in #620

Full Changelog: 0.1.0...v0.2.0