Document commonly used hydrologic model output variable units #2286
Workflow file for this run
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| # Test changes that have been pushed to the master and dev branches | |
| name: Testing and Validation | |
| # Controls when the action will run. | |
| on: | |
| push: | |
| branches: [ master, dev, notreal ] | |
| pull_request: | |
| branches: [ master, dev, notreal ] | |
| workflow_dispatch: | |
| env: | |
| # Obtained from https://docs.github.com/en/actions/using-github-hosted-runners/about-github-hosted-runners#supported-runners-and-hardware-resources | |
| # TODO: add something later that can check the runners for hyperthreading | |
| LINUX_NUM_PROC_CORES: 2 | |
| MACOS_NUM_PROC_CORES: 3 | |
| ASAN_OPTIONS: detect_leaks=false | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # Run general unit tests in linux environment | |
| test_unit: | |
| # The type of runner that the job will run on | |
| strategy: | |
| matrix: | |
| os: [ubuntu-22.04, macos-12] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| - name: Checkout the commit | |
| uses: actions/checkout@v4 | |
| - name: Build Unit Tests | |
| uses: ./.github/actions/ngen-build | |
| with: | |
| targets: "test_unit test_geopackage" | |
| build-cores: ${{ env.LINUX_NUM_PROC_CORES }} | |
| - name: Run Tests | |
| run: ./cmake_build/test/test_unit | |
| timeout-minutes: 15 | |
| - name: Run GeoPackage Tests | |
| run: | | |
| # Container underflow report is a false positive, from a build with instrumentation | |
| # disabled in one file where it hangs the compiler (ngen#567) | |
| export ASAN_OPTIONS=${ASAN_OPTIONS}:detect_container_overflow=0 | |
| ./cmake_build/test/test_geopackage | |
| timeout-minutes: 15 | |
| - name: Clean Up | |
| uses: ./.github/actions/clean-build | |
| # Test PET | |
| test_pet: | |
| # The type of runner that the job will run on | |
| strategy: | |
| matrix: | |
| os: [ubuntu-22.04, macos-12] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v4 | |
| - name: Build PET Tests | |
| uses: ./.github/actions/ngen-build | |
| with: | |
| targets: "compare_pet" | |
| bmi_c: on | |
| build-cores: ${{ env.LINUX_NUM_PROC_CORES }} | |
| - name: Run Tests | |
| run: ./cmake_build/test/compare_pet | |
| timeout-minutes: 15 | |
| - name: Clean Up | |
| uses: ./.github/actions/clean-build | |
| # Test MPI remote nexus behavior in linux | |
| test_mpi_remote_nexus: | |
| # The type of runner that the job will run on | |
| strategy: | |
| matrix: | |
| os: [ubuntu-22.04] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v4 | |
| - name: Build Unit Tests | |
| uses: ./.github/actions/ngen-build | |
| with: | |
| targets: "test_remote_nexus" | |
| build-cores: ${{ env.LINUX_NUM_PROC_CORES }} | |
| use_mpi: 'ON' | |
| - name: run_tests | |
| run: mpirun --allow-run-as-root -np 2 ./cmake_build/test/test_remote_nexus | |
| timeout-minutes: 15 | |
| - name: Clean Up | |
| uses: ./.github/actions/clean-build | |
| # Run BMI C++ tests in linux environment | |
| test_bmi_cpp: | |
| # The type of runner that the job will run on | |
| strategy: | |
| matrix: | |
| os: [ubuntu-22.04, macos-12] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v4 | |
| #make sure cxx bmi is initialized/ready | |
| - uses: ./.github/actions/ngen-submod-build | |
| with: | |
| mod-dir: "extern/bmi-cxx/" | |
| - name: Build Unit Tests | |
| uses: ./.github/actions/ngen-build | |
| with: | |
| targets: "test_bmi_cpp" | |
| build-cores: ${{ env.LINUX_NUM_PROC_CORES }} | |
| - name: Run Tests | |
| run: | | |
| cd ./cmake_build/test/ | |
| ./test_bmi_cpp | |
| cd ../../ | |
| timeout-minutes: 15 | |
| - name: Clean Up Unit Test Build | |
| uses: ./.github/actions/clean-build | |
| # Run BMI C tests in linux environment, and separating to isolate | |
| test_bmi_c: | |
| # The type of runner that the job will run on | |
| strategy: | |
| matrix: | |
| os: [ubuntu-22.04, macos-12] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v4 | |
| - name: Build Unit Tests | |
| uses: ./.github/actions/ngen-build | |
| with: | |
| targets: "test_bmi_c" | |
| build-cores: ${{ env.LINUX_NUM_PROC_CORES }} | |
| bmi_c: 'ON' | |
| - name: run_bmi_c_tests | |
| run: | | |
| cd ./cmake_build/test/ | |
| ./test_bmi_c | |
| cd ../../ | |
| timeout-minutes: 15 | |
| - name: Clean Up Unit Test Build | |
| uses: ./.github/actions/clean-build | |
| # As with the BMI C ubuntu job, separate Fortran in linux tests to keep setups clean and cause of failures clear. | |
| test_bmi_fortran: | |
| # The type of runner that the job will run on | |
| strategy: | |
| matrix: | |
| os: [ubuntu-22.04, macos-12] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v4 | |
| - name: Build Unit Tests | |
| uses: ./.github/actions/ngen-build | |
| with: | |
| targets: "test_bmi_fortran" | |
| build-cores: ${{ env.LINUX_NUM_PROC_CORES }} | |
| #is this required for this test? | |
| bmi_c: 'ON' | |
| bmi_fortran: 'ON' | |
| - name: Run Unit Tests | |
| run: | | |
| cd ./cmake_build/test/ | |
| ./test_bmi_fortran | |
| cd ../../ | |
| timeout-minutes: 15 | |
| - name: Clean Up Unit Test Build | |
| uses: ./.github/actions/clean-build | |
| # As with the BMI C ubuntu job, separate Python in linux tests to keep setups clean and cause of failures clear. | |
| test_bmi_python: | |
| # The type of runner that the job will run on | |
| strategy: | |
| matrix: | |
| os: [ubuntu-22.04, macos-12] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out repository under $GITHUB_WORKSPACE, so job can access it | |
| - uses: actions/checkout@v4 | |
| - name: Build Unit Tests | |
| uses: ./.github/actions/ngen-build | |
| with: | |
| targets: "test_bmi_python" | |
| build-cores: ${{ env.LINUX_NUM_PROC_CORES }} | |
| #is this required for this test? | |
| bmi_c: 'ON' | |
| use_python: 'ON' | |
| additional_python_requirements: 'extern/test_bmi_py/requirements.txt' | |
| - name: run_bmi_python_tests | |
| run: | | |
| . .venv/bin/activate | |
| cd ./cmake_build/ | |
| ./test/test_bmi_python | |
| cd ../../ | |
| timeout-minutes: 15 | |
| - name: Clean Up Unit Test Build | |
| uses: ./.github/actions/clean-build | |
| # As with the BMI C ubuntu job, separate multi BMI in linux tests to keep setups clean and cause of failures clear. | |
| test_bmi_multi: | |
| # The type of runner that the job will run on | |
| strategy: | |
| matrix: | |
| os: [ubuntu-22.04, macos-12] | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v4 | |
| - name: Build Unit Tests | |
| uses: ./.github/actions/ngen-build | |
| with: | |
| targets: "test_bmi_multi" | |
| build-cores: ${{ env.LINUX_NUM_PROC_CORES }} | |
| bmi_c: 'ON' | |
| bmi_fortran: 'ON' | |
| use_python: 'ON' | |
| additional_python_requirements: 'extern/test_bmi_py/requirements.txt' | |
| - name: Run Unit Tests | |
| run: | | |
| . .venv/bin/activate | |
| ./cmake_build/test/test_bmi_multi | |
| timeout-minutes: 15 | |
| - name: Clean Up Unit Test Build | |
| uses: ./.github/actions/clean-build | |
| # TODO: fails due to compilation error, at least in large part due to use of POSIX functions not supported on Windows. | |
| # TODO: Need to determine whether Windows support (in particular, development environment support) is necessary. | |
| # test_unit_windows_latest: | |
| # # The type of runner that the job will run on | |
| # runs-on: windows-latest | |
| # | |
| # # Steps represent a sequence of tasks that will be executed as part of the job | |
| # steps: | |
| # # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| # - uses: actions/checkout@v3 | |
| # | |
| # - name: git submodule | |
| # run: git submodule update --init --recursive -- test/googletest | |
| # | |
| # - name: cmake_init_build | |
| # run: cmake -B cmake_build -S . | |
| # | |
| # - name: build_tests | |
| # run: cmake --build cmake_build --target test_unit | |
| # timeout-minutes: 15 | |
| # | |
| # - name: run_tests | |
| # run: ./cmake_build/test/test_unit | |
| # timeout-minutes: 15 | |
| # | |
| # - name: clean_build | |
| # run: cmake --build cmake_build --target clean | |
| # | |
| # - name: cleanup_dir | |
| # run: rm -rf cmake_build |