Fillvalue fix.wif #294
Workflow file for this run
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| name: netcdf_hdf5_no_pnetcdf_ncint_mpich | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| env: | |
| CPPFLAGS: "-I${GITHUB_WORKSPACE}/mpich/include" | |
| LDFLAGS: "-L${GITHUB_WORKSPACE}/mpich/lib " | |
| # Note issue https://github.com/NCAR/ParallelIO/issues/1889 netcdf integration currently only works with netcdf 4.7.4 | |
| NETCDF_C_VERSION: v4.9.2 | |
| NETCDF_FORTRAN_VERSION: v4.6.1 | |
| MPICH_VERSION: v4.1.2 | |
| HDF5_VERSION: hdf5_1_12_2 | |
| FFLAGS: "-fallow-argument-mismatch" | |
| FCFLAGS: "-fallow-argument-mismatch" | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Installs | |
| run: | | |
| sudo apt-get install doxygen graphviz wget gfortran libjpeg-dev libz-dev libcurl4-gnutls-dev | |
| - name: cache-mpich | |
| id: cache-mpich | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/work/ParallelIO/ParallelIO/mpich | |
| key: mpich-${{ runner.os }}-${{ env.MPICH_VERSION }} | |
| - name: build-mpich | |
| if: steps.cache-mpich.outputs.cache-hit != 'true' | |
| uses: ./.github/actions/buildmpich | |
| with: | |
| install_prefix: ${GITHUB_WORKSPACE}/mpich | |
| mpich_version: ${{ env.MPICH_VERSION }} | |
| - name: cache-hdf5 | |
| id: cache-hdf5 | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/work/ParallelIO/ParallelIO/hdf5 | |
| key: hdf5-${{ runner.os }}-${{ env.HDF5_VERSION }}-mpich-${{ env.MPICH_VERSION }} | |
| - name: build-hdf5 | |
| if: steps.cache-hdf5.outputs.cache-hit != 'true' | |
| uses: ./.github/actions/buildhdf5 | |
| with: | |
| install_prefix: $GITHUB_WORKSPACE/hdf5 | |
| enable_parallel: True | |
| hdf5_version: ${{ env.HDF5_VERSION }} | |
| mpi_path: $GITHUB_WORKSPACE/mpich | |
| - name: cache-netcdf | |
| id: cache-netcdf | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/work/ParallelIO/ParallelIO/netcdf | |
| key: netcdf-${{ runner.os }}-${{ env.NETCDF_C_VERSION }}-${{ env.NETCDF_FORTRAN_VERSION }}-mpich-${{ env.MPICH_VERSION }}-hdf5-${{ env.HDF5_VERSION }} | |
| - name: Prep Netcdf | |
| run: | | |
| export CC=mpicc | |
| export FC=mpifort | |
| export PATH="${GITHUB_WORKSPACE}/hdf5/bin:${GITHUB_WORKSPACE}/mpich/bin:${GITHUB_WORKSPACE}/netcdf/bin:$PATH" | |
| export CPPFLAGS="$CPPFLAGS -I${GITHUB_WORKSPACE}/hdf5/include -I${GITHUB_WORKSPACE}/netcdf/include" | |
| export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:${GITHUB_WORKSPACE}/hdf5/lib:/usr/lib/x86_64-linux-gnu/" | |
| export LDFLAGS="$LDFLAGS -L${GITHUB_WORKSPACE}/hdf5/lib -L${GITHUB_WORKSPACE}/netcdf/lib -L/usr/lib/x86_64-linux-gnu/ -lcurl" | |
| printenv >> $GITHUB_ENV | |
| - name: Build NetCDF C | |
| if: steps.cache-netcdf.outputs.cache-hit != 'true' | |
| uses: ./.github/actions/buildnetcdf | |
| with: | |
| netcdf_version: ${{ env.NETCDF_C_VERSION }} | |
| install_prefix: ${GITHUB_WORKSPACE}/netcdf | |
| - name: cache-netcdf-fortran | |
| id: cache-netcdf-fortran | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/netcdf-fortran | |
| key: netcdf-fortran-${{ runner.os }}-${{ env.NETCDF_FORTRAN_VERSION }}-mpich-${{ env.MPICH_VERSION }}-hdf5-${{ env.HDF5_VERSION }} | |
| - name: Build NetCDF Fortran | |
| if: steps.cache-netcdf.outputs.cache-hit != 'true' | |
| uses: ./.github/actions/buildnetcdff | |
| with: | |
| netcdf_fortran_version: ${{ env.NETCDF_FORTRAN_VERSION }} | |
| install_prefix: ${GITHUB_WORKSPACE}/netcdf | |
| netcdf_c_path: ${GITHUB_WORKSPACE}/netcdf | |
| - name: Build ParallelIO with autotools | |
| uses: ./.github/actions/parallelio_autotools | |
| with: | |
| enable_fortran: True | |
| enable_netcdf_integration: True | |
| src_path: ${GITHUB_WORKSPACE} | |
| parallelio_version: ${{ env.GITHUB_SHA }} | |
| - name: make check | |
| run: | | |
| cd $GITHUB_WORKSPACE | |
| make -j check | |
| # - name: Setup tmate session | |
| # if: ${{ failure() }} | |
| # uses: mxschmitt/action-tmate@v3 |