add autoreconf -i #294
Workflow file for this run
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| name: Intel OneAPI | |
| # Tests ParallelIO using Intel Compiler and IMPI library. | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| env: | |
| CC: mpicc | |
| FC: mpiifort | |
| # Versions should match the github tag names | |
| PNETCDF_VERSION: checkpoint.1.12.3 | |
| NETCDF_C_VERSION: v4.9.2 | |
| NETCDF_FORTRAN_VERSION: v4.6.1 | |
| HDF5_VERSION: hdf5_1_12_2 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Installs | |
| run: | | |
| set -x | |
| sudo apt-get update | |
| sudo apt-get install libcurl4-gnutls-dev | |
| sudo apt-get install libz-dev | |
| echo "/opt/intel/oneapi/compiler/2023.2.1/linux/bin/intel64/" >> $GITHUB_PATH | |
| - name: cache intel compiler | |
| id: cache-intel | |
| uses: actions/cache@v3 | |
| with: | |
| path: /opt/intel/oneapi | |
| key: intel-${{ runner.os }} | |
| - name: Install Intel OneAPI | |
| if: steps.cache-intel.outputs.cache-hit != 'true' | |
| uses: ./.github/actions/intelcompilers | |
| - name: Prep Intel OneAPI | |
| if: steps.cache-intel.outputs.cache-hit == 'true' | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| printenv >> $GITHUB_ENV | |
| - name: cache-hdf5 | |
| id: cache-hdf5 | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/work/ParallelIO/ParallelIO/hdf5 | |
| key: hdf5-${{ runner.os }}-${{ env.HDF5_VERSION }}-impi | |
| - name: build-hdf5 | |
| if: steps.cache-hdf5.outputs.cache-hit != 'true' | |
| uses: ./.github/actions/buildhdf5 | |
| with: | |
| install_prefix: ${GITHUB_WORKSPACE}/hdf5 | |
| enable_parallel: True | |
| hdf5_version: ${{ env.HDF5_VERSION }} | |
| mpi_path: /opt/intel/mpi | |
| - name: cache netcdf C | |
| id: cache-netcdf-c | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/work/ParallelIO/ParallelIO/netcdf-c | |
| key: netcdf-c-${{ runner.os }}-${{ env.NETCDF_C_VERSION }}-impi-hdf5-${{ env.HDF5_VERSION }} | |
| - name: cache netcdf Fortran | |
| id: cache-netcdf-f | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/work/ParallelIO/ParallelIO/netcdf-f | |
| key: netcdf-f-${{ runner.os }}-${{ env.NETCDF_FORTRAN_VERSION }}-impi-hdf5-${{ env.HDF5_VERSION }} | |
| - name: prep netcdf-c | |
| run: | | |
| export PATH=$GITHUB_WORKSPACE/hdf5/bin:$GITHUB_WORKSPACE/netcdf/bin:$PATH | |
| export LDFLAGS="$LDFLAGS -L$GITHUB_WORKSPACE/hdf5/lib -L/usr/lib/x86_64-linux-gnu/ -lcurl" | |
| export CPPFLAGS="$CPPFLAGS -I$GITHUB_WORKSPACE/hdf5/include -I$GITHUB_WORKSPACE/netcdf/include" | |
| export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:$GITHUB_WORKSPACE/hdf5/lib:/usr/lib/x86_64-linux-gnu/:/opt/intel/oneapi/compiler/2023.2.1/linux/compiler/lib/intel64_lin/" | |
| printenv >> $GITHUB_ENV | |
| - name: build-netcdf-c | |
| if: steps.cache-netcdf-c.outputs.cache-hit != 'true' | |
| uses: ./.github/actions/buildnetcdf | |
| with: | |
| netcdf_version: ${{ env.NETCDF_C_VERSION }} | |
| install_prefix: ${GITHUB_WORKSPACE}/netcdf-c | |
| - name: Build NetCDF Fortran | |
| if: steps.cache-netcdf-f.outputs.cache-hit != 'true' | |
| uses: ./.github/actions/buildnetcdff | |
| with: | |
| netcdf_fortran_version: ${{ env.NETCDF_FORTRAN_VERSION }} | |
| install_prefix: ${GITHUB_WORKSPACE}/netcdf-f | |
| netcdf_c_path: ${GITHUB_WORKSPACE}/netcdf-c | |
| - name: cache-pnetcdf | |
| id: cache-pnetcdf | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/work/ParallelIO/ParallelIO/pnetcdf | |
| key: pnetcdf-${{ runner.os }}-${{ env.PNETCDF_VERSION }}-impi-5 | |
| - name: Build PNetCDF | |
| if: steps.cache-pnetcdf.outputs.cache-hit != 'true' | |
| uses: ./.github/actions/buildpnetcdf | |
| with: | |
| pnetcdf_version: ${{ env.PNETCDF_VERSION }} | |
| install_prefix: ${GITHUB_WORKSPACE}/pnetcdf | |
| - name: cmake build | |
| uses: ./.github/actions/parallelio_cmake | |
| with: | |
| parallelio_version: ${{ env.GITHUB_SHA }} | |
| enable_fortran: True | |
| netcdf_c_library: $GITHUB_WORKSPACE/netcdf-c/lib/libnetcdf.so | |
| netcdf_c_include_dir: $GITHUB_WORKSPACE/netcdf-c/include | |
| netcdf_fortran_library: $GITHUB_WORKSPACE/netcdf-f/lib/libnetcdff.so | |
| netcdf_fortran_include_dir: $GITHUB_WORKSPACE/netcdf-f/include | |
| pnetcdf_library: $GITHUB_WORKSPACE/pnetcdf/lib/libpnetcdf.a | |
| pnetcdf_include_dir: $GITHUB_WORKSPACE/pnetcdf/include | |
| install_prefix: $GITHUB_WORKSPACE/parallelio | |
| - name: parallelio tests | |
| run: | | |
| pushd $GITHUB_WORKSPACE/build | |
| make tests | |
| ctest -VV -E test_async_ | |
| popd | |
| # the following can be used by developers to login to the github server in case of errors | |
| # see https://github.com/marketplace/actions/debugging-with-tmate for further details | |
| # - name: Setup tmate session | |
| # if: ${{ failure() }} | |
| # uses: mxschmitt/action-tmate@v3 |