Merge pull request #108 from MartinPippel/update #142
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| name: Continuous Integration | |
| # Controls when the action will run. Triggers the workflow on push or pull request | |
| # events but only for the master branch, or add_actions branch | |
| on: | |
| push: | |
| branches: [ master, test_actions ] | |
| pull_request: | |
| branches: [ master, test_actions ] | |
| jobs: | |
| test_workflow: | |
| runs-on: ubuntu-latest | |
| continue-on-error: true | |
| env: | |
| NXF_ANSI_LOG: false | |
| strategy: | |
| matrix: | |
| NXF_VER: | |
| - "22.10.1" | |
| - "latest" | |
| profile: | |
| - docker | |
| workflow: | |
| - 'abinitio_training' | |
| - 'annotation_preprocessing' | |
| - 'functional_annotation' | |
| - 'transcript_assembly' | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # https://github.com/marketplace/actions/checkout | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| # https://github.com/marketplace/actions/setup-nextflow | |
| - name: Install Nextflow | |
| uses: nf-core/setup-nextflow@v1 | |
| with: | |
| version: "${{ matrix.NXF_VER }}" | |
| - name: Test ${{ matrix.workflow }} with profile ${{ matrix.profile }} | |
| run: nextflow run -profile test,${{ matrix.profile }} main.nf --subworkflow ${{ matrix.workflow }} |