Merge pull request #106 from MartinPippel/update_blast #137

	name: Continuous Integration

	# Controls when the action will run. Triggers the workflow on push or pull request
	# events but only for the master branch, or add_actions branch
	on:
	push:
	branches: [ master, test_actions ]
	pull_request:
	branches: [ master, test_actions ]

	jobs:
	test_workflow:
	runs-on: ubuntu-latest
	continue-on-error: true

	env:
	NXF_ANSI_LOG: false

	strategy:
	matrix:
	NXF_VER:
	- "22.10.1"
	- "latest"
	profile:
	- docker
	workflow:
	- 'abinitio_training'
	- 'annotation_preprocessing'
	- 'functional_annotation'
	- 'transcript_assembly'

	# Steps represent a sequence of tasks that will be executed as part of the job
	steps:
	# https://github.com/marketplace/actions/checkout
	- name: Check out repository code
	uses: actions/checkout@v4

	# https://github.com/marketplace/actions/setup-nextflow
	- name: Install Nextflow
	uses: nf-core/setup-nextflow@v1
	with:
	version: "${{ matrix.NXF_VER }}"

	- name: Test ${{ matrix.workflow }} with profile ${{ matrix.profile }}
	run: nextflow run -profile test,${{ matrix.profile }} main.nf --subworkflow ${{ matrix.workflow }}

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