Fix #38; update EMBLmyGFF3 to 1.2.7

NBISweden · Aug 27, 2019 · 5153f53 · 5153f53
1 parent be03cf2
commit 5153f53
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Showing 2 changed files with 5 additions and 5 deletions.
diff --git a/EMBLmyGFF3/EMBLmyGFF3.py b/EMBLmyGFF3/EMBLmyGFF3.py
@@ -188,12 +188,12 @@ def _add_mandatory(self):
         try:
             start = seq.index('n')
             while start:
-                logging.debug("There is gap starting at position %s", start)
+                logging.debug("There is gap in %s starting at position %s" % (self.record.name,start))
                 # Now find the end
                 end = start + 1
-                while end:
+                while end < len(seq):
                     if seq[end] == 'n' :
-                        end +=1  
+                        end +=1
                     else:
                         break
 

diff --git a/setup.py b/setup.py
@@ -4,12 +4,12 @@
 
 setup(
     name='EMBLmyGFF3',
-    version='1.2.6',
+    version='1.2.7',
 
     description='An efficient way to convert gff3 annotation files into EMBL format ready to submit',
 
     url='https://github.com/NBISweden/EMBLmyGFF3',
-    download_url='https://github.com/NBISweden/EMBLmyGFF3/archive/v1.2.6.tar.gz',
+    download_url='https://github.com/NBISweden/EMBLmyGFF3/archive/v1.2.7.tar.gz',
     author='Martin Norling, Niclas Jareborg, Jacques Dainat',
 
     license='GPL-3.0',