GitHub - ModelDBRepository/113997: Hodgkin-Huxley model of persistent activity in prefrontal cortex neurons (Winograd et al. 2008)

ModelDBRepository / 113997 Public

Notifications You must be signed in to change notification settings
Fork 2
Star 0

Hodgkin-Huxley model of persistent activity in prefrontal cortex neurons (Winograd et al. 2008)

modeldb.science/113997

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
APCounter2.mod		APCounter2.mod
Cadynamics.mod		Cadynamics.mod
HH2.mod		HH2.mod
ICaL.mod		ICaL.mod
IKM.mod		IKM.mod
Ih.mod		Ih.mod
README.html		README.html
demo_HPGA_non-saturating.hoc		demo_HPGA_non-saturating.hoc
demo_HPGA_non-saturating_noIh.hoc		demo_HPGA_non-saturating_noIh.hoc
demo_HPGA_saturating.hoc		demo_HPGA_saturating.hoc
init.hoc		init.hoc
ipulse3.mod		ipulse3.mod
mosinit.hoc		mosinit.hoc
pasi.mod		pasi.mod
screenshot.jpg		screenshot.jpg

Repository files navigation

<html><pre>
Simulation of hyperpolarization-activated graded persistent
activity in prefrontal cortex

Reference: Winograd M, Destexhe A, Sanchez-Vives, MV.
Hyperpolarization-activated graded persistent activity in 
the prefrontal cortex.  Proc. Natl. Acad. Sci. USA
105: 7298-7303, 2008.

Intrinsic currents: INa, IKd for action potentials, IM for
spike-frequency adaptation, ICaL for calcium currents, 
calcium dynamics and the hyperpolarization-activated current
Ih.  There is also a calcium regulation of Ih, which was 
taken from thalamic neurons (Destexhe et al., J Neurophysiol.,
1996)

demo_HPGA_non-saturating.hoc:
"non-saturating" model (Fig 4 of the paper)

demo_HPGA_non-saturating_noIh.hoc: 
"non-saturating" model, no Ih (Fig 4 of the paper)

demo_HPGA_saturating.hoc: 
"saturating" model (supplementary Fig S7 of the paper)

Usage:

Autolaunch from ModelDB and select to run an above file from the radio
buttons and press Init & Run to generate graphs for example like (the
first Fig 4 non-saturating):

<img src="./screenshot.jpg" alt="screenshot">

or download and extract the archive, then under

linux/unix:
-----------

cd to the extracted folder and compile the mod files with nrnivmodl.
Then type "nrngui mosinit.hoc" to start the simulations.

mswin:
------

Compile the mod files with mknrndll (cd to the extracted folder and
make the dll).  Double click on mosinit.hoc file to start the
simulations.

MAC OS X:
---------

Drag and drop the extracted folder onto the mknrndll icon.  Drag and
drop the mosinit.hoc file on the nrngui icon to start the simulations.

The model files were supplied by Alain Destexhe.

20110406 updated to use methods cnexp and derivimplicit over euler