Merge branch 'MilesCranmer:master' into apptainer

Dockerfile

@@ -29,7 +29,7 @@ ADD ./pysr /pysr/pysr
 RUN pip3 install --no-cache-dir .
 
 # Install Julia pre-requisites:
-RUN python3 -c 'import pysr'
+RUN python3 -c 'import pysr; pysr.load_all_packages()'
 
 # metainformation
 LABEL org.opencontainers.image.authors = "Miles Cranmer"

pysr/__init__.py

@@ -7,6 +7,7 @@
 from .deprecated import best, best_callable, best_row, best_tex, install, pysr
 from .export_jax import sympy2jax
 from .export_torch import sympy2torch
+from .julia_extensions import load_all_packages
 from .sr import PySRRegressor
 
 # This file is created by setuptools_scm during the build process:
@@ -19,6 +20,7 @@
     "sympy2jax",
     "sympy2torch",
     "install",
+    "load_all_packages",
     "PySRRegressor",
     "best",
     "best_callable",

pysr/julia_extensions.py

@@ -22,6 +22,17 @@ def load_required_packages(
         load_package("ClusterManagers", "34f1f09b-3a8b-5176-ab39-66d58a4d544e")
 
 
+def load_all_packages():
+    """Install and load all Julia extensions available to PySR."""
+    load_required_packages(
+        turbo=True, bumper=True, enable_autodiff=True, cluster_manager="slurm"
+    )
+
+
+# TODO: Refactor this file so we can install all packages at once using `juliapkg`,
+#       ideally parameterizable via the regular Python extras API
+
+
 def isinstalled(uuid_s: str):
     return jl.haskey(Pkg.dependencies(), jl.Base.UUID(uuid_s))
 

pysr/test/test.py

@@ -12,7 +12,7 @@
 import sympy  # type: ignore
 from sklearn.utils.estimator_checks import check_estimator
 
-from pysr import PySRRegressor, install, jl
+from pysr import PySRRegressor, install, jl, load_all_packages
 from pysr.export_latex import sympy2latex
 from pysr.feature_selection import _handle_feature_selection, run_feature_selection
 from pysr.julia_helpers import init_julia
@@ -739,6 +739,11 @@ def test_param_groupings(self):
         # Check the sets are equal:
         self.assertSetEqual(set(params), set(regressor_params))
 
+    def test_load_all_packages(self):
+        """Test we can load all packages at once."""
+        load_all_packages()
+        self.assertTrue(jl.seval("ClusterManagers isa Module"))
+
 
 class TestHelpMessages(unittest.TestCase):
     """Test user help messages."""