This pakage provides tooling intended to inspect and curate image skeletons in napari.
Additionally, slicing and exporting of images along edges is supported.
Tooling includes:
- inspect skeleton
- inspect subgraphs
- compare with original image
- remove nodes
- remove edges
- measure length of edges
- measure angles between edges
- quantify lobe dimensions
- export image along edges
In principle it is extandable to any networkx compatible graph structure.
It is recommended to install this package in a virtual environment.
conda create -n napari-skeleton-curator python=3.9.9
conda activate napari-skeleton-curator
You can install napari-skeleton-curator via [pip]:
pip install napari-skeleton-curator
Or the latest
code/skeleton.py contains the functionallity
examples/skeleton_merge_nodes.ipynb is a notebook that demonstrates the data type and workflow.