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Add note on graphical user interface in 3D Slicer #33

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Add note on graphical user interface in 3D Slicer #33

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9 changes: 8 additions & 1 deletion readme.md
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Expand Up @@ -26,7 +26,14 @@ coefficient and -0.80 to -2.75 mm for the Hausdorff distance (Bonferroni-adjuste
- HD-BET is very fast on GPU with <10s run time per MRI sequence. Even on CPU it is not slower than other commonly
used tools.

## Installation Instructions
## Graphical user interface

HD-BET is available with a convenient graphical user interface in [3D Slicer](https://www.slicer.org) via the [HDBrainExtraction](https://github.com/lassoan/SlicerHDBrainExtraction#hdbrainextraction) extension. It can be installed with a few clicks as described [here](https://github.com/lassoan/SlicerHDBrainExtraction#tutorial) (in this case it is *not needed* to follow the steps described in "Installation Instructions" section below).

![Screenshot of HD-BET in 3D Slicer](https://github.com/lassoan/SlicerHDBrainExtraction/raw/main/Screenshot01.jpg)

## Installation Instructions

Note that you need to have a python3 installation for HD-BET to work. Please also make sure to install HD-BET with the
correct pip version (the one that is connected to python3). You can verify this using the `--version` command:

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