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Feature/arkode sts #541

Merged
merged 411 commits into from
Nov 15, 2024
Merged

Feature/arkode sts #541

merged 411 commits into from
Nov 15, 2024
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Commits on Sep 11, 2024

  1. Update doc/arkode/guide/source/Usage/LSRKStep/User_callable.rst 

    Co-authored-by: Daniel R. Reynolds <[email protected]>
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  2. Update doc/arkode/guide/source/Usage/LSRKStep/User_callable.rst 

    Co-authored-by: Daniel R. Reynolds <[email protected]>
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  3. Update doc/arkode/guide/source/Usage/LSRKStep/User_callable.rst 

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  4. Update doc/arkode/guide/source/Usage/LSRKStep/User_callable.rst 

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  5. Update doc/arkode/guide/source/Usage/LSRKStep/User_callable.rst 

    Co-authored-by: Daniel R. Reynolds <[email protected]>
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  6. Update doc/arkode/guide/source/Usage/LSRKStep/User_supplied.rst 

    Co-authored-by: Daniel R. Reynolds <[email protected]>
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  7. Update doc/arkode/guide/source/Usage/LSRKStep/User_supplied.rst 

    Co-authored-by: Daniel R. Reynolds <[email protected]>
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  8. Update doc/shared/sundials.bib 

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  9. Update src/arkode/arkode_lsrkstep_io.c 

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  10. reinit updates

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  11. Update src/arkode/arkode_lsrkstep.c 

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  12. Update examples/arkode/C_serial/lsrk_analytic.c 

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  13. Update examples/arkode/C_serial/lsrk_analytic.c 

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Commits on Sep 12, 2024

  1. Apply suggestions from code review 

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  2. Formatting

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  3. Update src/arkode/arkode_lsrkstep_io.c 

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Commits on Sep 13, 2024

  1. Fixed Num of RHS evaluations

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  2. added new functions

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  3. printf to arkProcessError

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  4. printf to arkProcessError

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  5. N_VLinearSum to N_VLinearCombination

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  6. step module parameters

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  7. step_mem->q update

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  8. comment update

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  9. match updates with a different branch 

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Commits on Sep 16, 2024

  1. order updates

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  2. stagemaxlimit problem

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Commits on Sep 17, 2024

  1. Fixed LSRK constant descriptions in table

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  2. Ran formatter, and regenerated Fortran interfaces

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  3. Fixed vestigial documentation references to ARKStep in other stepper … 

    …docs
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  4. Minor cleanup

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  5. Renamed 'explicit' to 'explicitSTS'

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  6. Fixed conversion 'error'

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  7. formatting

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  8. Fixed conversion 'error'

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  9. Fixed unused variable 'error'

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  10. Fixed unused variable, shadow, and reorder 'errors'

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  11. Fixed newly-introduced compilation error; added analytical solution f… 

    …or sod shock problem
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  12. Fixed unused variable 'error'

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  13. formatting

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  14. formatting

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  15. revision

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  16. revision

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  17. formatting

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Commits on Sep 18, 2024

  1. precision

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  2. revision

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Commits on Sep 19, 2024

  1. Applied some suggestions from code review

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  2. Made recommended changes from code review

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  3. revision

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  4. Moved 'using namespace std' to .cpp file

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  5. removed use of SUNR* math functions

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  6. merged

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  7. formatting

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  8. nfe

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  9. Merge branch 'feature/arkode-sts' of github.com:LLNL/sundials into fe… 

    …ature/arkode-sts
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  10. revision

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Commits on Sep 20, 2024

  1. Applied recommendation from code review

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  2. revision

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Commits on Sep 21, 2024

  1. Formatting

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  2. Formatting

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  3. Formatting

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  4. revision

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  5. Formatting

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  6. Formatting

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  7. revision

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  8. Bugfix & formatting

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  9. Formatting

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  10. Formatting

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  11. Test Failure issue

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  12. revert for testing failure

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  13. Formatting

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Commits on Sep 23, 2024

  1. revision

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Commits on Sep 24, 2024

  1. revision

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  2. Formatting

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Commits on Sep 25, 2024

  1. revision

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  2. revision

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  3. Updated diffusion_2D benchmarkbased on PR feedback

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  4. Merge branch 'feature/arkode-sts' of github.com:LLNL/sundials into fe… 

    …ature/arkode-sts
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  5. Apply suggestions from code review 

    Co-authored-by: David Gardner <[email protected]>
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  6. Added braces (I feel like I'm at the orthodontist) and changed some c… 

    …omments
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  7. Apply suggestions from code review 

    Co-authored-by: David Gardner <[email protected]>
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  8. more braces

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  9. Formatting

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  10. two more NULL -> nullptr

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  11. Apply suggestions from code review 

    Co-authored-by: David Gardner <[email protected]>
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  12. revision

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  13. Merge branch 'feature/arkode-sts' of github.com:LLNL/sundials into fe… 

    …ature/arkode-sts
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  14. Apply suggestions from code review 

    Co-authored-by: David Gardner <[email protected]>
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Commits on Sep 26, 2024

  1. revert NV_Ith_S

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  2. revision

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  3. revision

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Commits on Sep 27, 2024

  1. Formatting

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  2. revision

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Commits on Sep 28, 2024

  1. suncomplextype

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  2. Formatting

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Commits on Sep 29, 2024

  1. N_Vector Fe

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Commits on Sep 30, 2024

  1. Revert "suncomplextype" 

    This reverts commit 9eb4bff.
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  2. post revert fixes

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  3. apply formatting

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  4. update swig

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Commits on Oct 1, 2024

  1. fixed time step and fn issues

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  2. ss fixed

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  3. Formatting

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  4. Apply suggestions from code review 

    batch commit

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  5. output updates

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  6. SSP43

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  7. Formatting

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  8. Revision

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  9. revision

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  10. Formatting

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Commits on Oct 2, 2024

  1. ProcessStage and DEBUG modes

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  2. Revision

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Commits on Oct 3, 2024

  1. reduce redundancy

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  2. reduce redundancy vol.2

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  3. reduce reduncancy

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  4. Bug fix

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  5. revision

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  6. Revision

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  7. Revision

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  8. retry_contraction_fac

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Commits on Oct 4, 2024

  1. num_of_retries

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  2. default controller is removed

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  3. LSRKStepSetSSPStageNum

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  4. LSRKStepSetDomEigFrequency

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  5. LSRKStepSetDomEigSafetyFactor

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  6. dom_eig_fn check

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  7. output files

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  8. Formatting

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  9. build and test failure fix

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  10. build and test

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  11. build and test failure

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  12. Revert and bug fix

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  13. Fixed broken LSRKStepCreateSTS call due to PR revisions

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  14. Formatting

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  15. Merge branch 'feature/arkode-sts' of github.com:LLNL/sundials into fe… 

    …ature/arkode-sts
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  16. fixedstep

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Commits on Oct 5, 2024

  1. fn_is_current

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  2. returns

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  3. consistency

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  4. revision

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  5. Formatting

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Commits on Oct 7, 2024

  1. Build-Test Fixes

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  2. Formatting

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Commits on Oct 8, 2024

  1. Unresolved issues and build test failure

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  2. Formatting & build test failure

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  3. Formatting

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  4. adjust which test runs in single presicion and updated tolerances

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  5. Merge branch 'feature/arkode-sts' of github.com:LLNL/sundials into fe… 

    …ature/arkode-sts
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  6. updated answers repo

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  7. update the test problem stiffness for single

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  8. Formatting

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  9. Merge branch 'develop' into feature/arkode-sts

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  10. Removed single precision CI test, updated ordering to fit alphabetica… 

    …l style
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  11. Merge branch 'feature/arkode-sts' of github.com:LLNL/sundials into fe… 

    …ature/arkode-sts
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Commits on Oct 9, 2024

  1. CI test bug-fix

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  2. CI testing bug-fix

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  3. Updated answer files

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  4. Cleaned up lsrkStep_PrintAllStats

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  5. Cleaned up Init function to properly handle the case where an SSP sol… 

    …ver is constructed but the method is not manually specified
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  6. bugfix

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  7. Fixed uninitialized warning

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  8. Formatting

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  9. Merge branch 'feature/arkode-sts' of github.com:LLNL/sundials into fe… 

    …ature/arkode-sts
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  10. updated answers commit

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  11. merged

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  12. Update answers

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  13. update output files for testing with doubles

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  14. Added missing .out files

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  15. Merge branch 'feature/arkode-sts' of github.com:LLNL/sundials into fe… 

    …ature/arkode-sts
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  16. update output files

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Commits on Oct 10, 2024

  1. extended presicion debug

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  2. update output files

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  3. Formatting

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  4. update output files

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  5. update output files

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  6. Fixed specification of Lagrange interpolation default

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  7. Updated mechanism for setting up default SSP and STS methods

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  8. Merge branch 'feature/arkode-sts' of github.com:LLNL/sundials into fe… 

    …ature/arkode-sts
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  9. formatting

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  10. A few more minor cleanup items

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Commits on Oct 15, 2024

  1. Merge branch 'develop' into feature/arkode-sts

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  2. merge with develop

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Commits on Oct 16, 2024

  1. GetNumRhsEvals

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  2. Formatting and swig

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  3. update outputs

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  4. functions reordering

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  5. formatting

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  6. documentation

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Commits on Oct 20, 2024

  1. comment on ARK_RETRY_STEP

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Commits on Oct 22, 2024

  1. revision

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  2. update outputs

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  3. update output files

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Commits on Oct 23, 2024

  1. revision

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  2. Merge branch 'feature/arkode-sts' of https://github.com/LLNL/sundials … 

    …into feature/arkode-sts

Merge
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  3. formatting

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  4. Postpostprocessing

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  5. ARK_RETRY_STEP counter

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Commits on Oct 24, 2024

  1. formatting

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  2. dom eig update logic

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  3. RHS recoverable logic

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  4. dom_eig_nst type update

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  5. formatting

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  6. update output files

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  7. update output files

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Commits on Oct 28, 2024

  1. RHS evaluations

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  2. Removed resize function

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  3. formatting

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  4. RHS evaluation logic with int

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  5. SetSTS and SetSSP methods

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  6. swig and formatting

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Commits on Nov 4, 2024

  1. Merge branch 'develop' into feature/arkode-sts

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  2. update .out files

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Commits on Nov 5, 2024

  1. comment and WriteParameters update

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Commits on Nov 6, 2024

  1. STAGE_MAX_LIMIT_DEFAULT

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  2. correcting a typo

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  3. fomatting

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  4. gitlab issue

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  5. Updated comment

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  6. casting req_stages issue

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  7. formatting

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  8. STAGE_MAX_LIMIT_DEFAULT

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  9. formatting

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Commits on Nov 13, 2024

  1. bulk revision

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  2. bulk revision

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  3. bulk revision

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  4. swig, formatting and output updates

    @maggul
    maggul committed Nov 13, 2024
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  5. swig, formatting and output updates

    @maggul
    maggul committed Nov 13, 2024
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  6. private function macros

    @maggul
    maggul committed Nov 13, 2024
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  7. sunindextype to int in macros

    @maggul
    maggul committed Nov 13, 2024
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  8. formatting

    @maggul
    maggul committed Nov 13, 2024
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  9. Fix time in ProcessStage

    @maggul
    maggul committed Nov 13, 2024
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Commits on Nov 14, 2024

  1. ProcessStage time

    @maggul
    maggul committed Nov 14, 2024
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  2. ARK_FULLRHS_END update

    @maggul
    maggul committed Nov 14, 2024
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  3. Removing SUNIround, etc.

    @maggul
    maggul committed Nov 14, 2024
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  4. formatting and casting

    @maggul
    maggul committed Nov 14, 2024
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  5. limitting ss by INT_MAX

    @maggul
    maggul committed Nov 14, 2024
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  6. number of stages

    @maggul
    maggul committed Nov 14, 2024
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  7. round the sqrt

    @maggul
    maggul committed Nov 14, 2024
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Commits on Nov 15, 2024

  1. bulk revision

    @maggul
    maggul committed Nov 15, 2024
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  2. added missing ProcessStages

    @maggul
    maggul committed Nov 15, 2024
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  3. formatting

    @maggul
    maggul committed Nov 15, 2024
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  4. Update src/arkode/arkode_lsrkstep.c 

    Broke long comment into multiple lines.
    @drreynolds
    drreynolds authored Nov 15, 2024
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  5. Fixed .out file for Jenkins

    @drreynolds
    drreynolds committed Nov 15, 2024
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  6. change tabs to spaces

    @gardner48
    gardner48 committed Nov 15, 2024
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  7. fn to tempv3

    @maggul
    maggul committed Nov 15, 2024
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  8. update fn_is_current flag

    @gardner48
    gardner48 committed Nov 15, 2024
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  9. remove trailing whitespace

    @gardner48
    gardner48 committed Nov 15, 2024
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  10. apply formatting

    @gardner48
    gardner48 committed Nov 15, 2024
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  11. update answers submodule

    @gardner48
    gardner48 committed Nov 15, 2024
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  12. update out files

    @gardner48
    gardner48 committed Nov 15, 2024
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