Shared repository for code related to the fossils project in Thomas Serre's lab at Brown University
INSTALLATION: To install, follow procedure below:
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cd leavesdb
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pip install -e .
ENVIRONMENT SETUP: Note, this is simply a cloning of the conda environment used to create the package, and thus is not a minimum set of requirements. Creating a minimum environment specification is TBD.
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Navigate to the root /leavesdb directory containing environment spec file 'leavesdb.yml'
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conda env create -f leavesdb.yml -n leavesdb
Note, where it says "-n leavesdb' above, you can replace 'leavesdb" with your preferred choice of env name.
GETTING STARTED: Take a look at leaves_db_demo.ipynb in the root directory for an example of how to interact with the database and query data.
MODIFICATION: To modify and push changes to git:
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Navigate to root directory of package (/leavesdb)
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git add [list of files to commit] or git add --all
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git commit -m "message describing changes"
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git push
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'[Enter GitHub login credentials]'