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23 Open 127 Closed
23 Open 127 Closed
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Issues list

iss is skipping certain contigs during simulation
#274 opened Nov 14, 2024 by tslaird
ImportError: cannot import name 'gc_fraction' from 'Bio.SeqUtils'
#273 opened Nov 8, 2024 by ammaraziz
Inability to Generate Perfect Reads
#272 opened Sep 18, 2024 by Shruteek
2
Simulating higher read depth leads to a KeyError: 'x'
#271 opened Sep 16, 2024 by zoey-rw
FileNotFoundError in concatenate
#269 opened Aug 2, 2024 by jjkoehorst
1
3
Fragment length doesn't change the read generation behaviour
#268 opened Jul 15, 2024 by pabviana
1
Abundance file shows more genomes than are used need answer issues that need clarifications from OP
#262 opened May 27, 2024 by Naturalist1986
2
Simulate (targeted) sequencing of single genes need answer issues that need clarifications from OP
#258 opened Mar 13, 2024 by FreekManders
1
temporary vcfs are not cleaned up bug
#254 opened Feb 23, 2024 by HadrienG
1
1
-u parameter should be -U
#241 opened Sep 21, 2023 by till-bornemann
1
Support compressed genomes enhancement
#234 opened Jul 25, 2023 by mbhall88
1
coverage in chr19 of mm39 lower than other chromosomes need answer issues that need clarifications from OP question
#231 opened Mar 9, 2023 by lablancoberdugo
1
Simulating human mitochondrial reads from reference mitochondrial genome need answer issues that need clarifications from OP question
#223 opened Jul 1, 2022 by Rohit-Satyam
2
Output the starting position of each sequence in the reference genome enhancement
#222 opened Jun 30, 2022 by maojanlin
Coverage file error bug
#220 opened Feb 4, 2022 by esteinig
1
Traceback Error + Temporary File Outputs bug need answer issues that need clarifications from OP
#219 opened Jan 22, 2022 by epanousis
1
Dependency between seed and number of threads (cpus) bug on hold good idea, might happen in the future
#215 opened Sep 17, 2021 by izaak-coleman
1
Generating reads that only start in a given position
#213 opened Aug 29, 2021 by TheGreatJack
Memory leakage when using abundance file bug
#208 opened Jul 13, 2021 by cimendes
@HadrienG
15
Huge number of tmp files causing issues on cloud VM enhancement on hold good idea, might happen in the future
#188 opened Aug 28, 2020 by aquagenomics
1
circular genomes? enhancement on hold good idea, might happen in the future
#184 opened Jul 13, 2020 by dpellow
1
presets enhancement on hold good idea, might happen in the future
#53 opened Apr 11, 2018 by HadrienG
1
Roadmap
#1 opened Nov 16, 2016 by HadrienG
20 tasks done
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