removed hard linking of HDF5 #51
Workflow file for this run
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| name: hdf5-iotest | |
| # Controls when the action will run. | |
| #Triggers the workflow on push or pull requests. | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| # A workflow run is made up of one or more jobs that | |
| # can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains a single job called "build" | |
| build: | |
| strategy: | |
| matrix: | |
| name: ["Ubuntu Latest GCC", "Ubuntu Latest GCC -- develop"] | |
| include: | |
| - name: "Ubuntu Latest GCC" | |
| artifact: "Linux.tar.xz" | |
| os: ubuntu-latest | |
| hdf5: "release" | |
| - name: "Ubuntu Latest GCC -- develop" | |
| artifact: "Linux.tar.xz" | |
| os: ubuntu-latest | |
| hdf5: "develop" | |
| name: ${{ matrix.name }} | |
| # The type of runner that the job will run on. | |
| runs-on: ${{ matrix.os }} | |
| if: "!contains(github.event.head_commit.message, 'skip-ci')" | |
| # Steps represent a sequence of tasks that will be executed | |
| # as part of the job. | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/[email protected] | |
| - name: Update repository code | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install uuid-dev | |
| - name: Install Dependencies (Linux--HDF5-release) | |
| if: matrix.hdf5 == 'release' | |
| run: | | |
| sudo apt-get install -qq mpich | |
| sudo apt-get install -qq libhdf5-mpich-dev | |
| # Set env vars | |
| echo "CC=mpicc" >> $GITHUB_ENV | |
| echo "CPPFLAGS=-I/usr/include/hdf5/mpich" >> $GITHUB_ENV | |
| echo "LDFLAGS=-L/usr/lib/x86_64-linux-gnu/hdf5/mpich" >> $GITHUB_ENV | |
| - name: Install Dependencies (Linux--HDF5-develop) | |
| if: matrix.hdf5 == 'develop' | |
| run: | | |
| # Use the newest stable gcc compiler | |
| sudo apt-get install automake autoconf libtool libtool-bin | |
| sudo apt-get install -qq mpich | |
| echo "CC=mpicc" >> $GITHUB_ENV | |
| ################################## | |
| # INSTALL HDF5 FROM SOURCE | |
| ################################## | |
| git clone https://github.com/HDFGroup/hdf5.git | |
| export HOME_DIR=$(echo ~) | |
| export HDF5_DIR=$HOME_DIR/hdf5 | |
| echo "HDF5_DIR=$HDF5_DIR" >> $GITHUB_ENV | |
| cd hdf5 | |
| ./autogen.sh | |
| ./configure --enable-build-mode=debug --without-szlib --disable-fortran --disable-hl \ | |
| --disable-tests \ | |
| --prefix=$HDF5_DIR/hdf5 \ | |
| --enable-parallel | |
| make -j 8 install | |
| mydir="$PWD" | |
| echo "CPPFLAGS=-I$HDF5_DIR/include" >> $GITHUB_ENV | |
| echo "LDFLAGS=-L$HDF5_DIR/lib" >> $GITHUB_ENV | |
| ################################## | |
| # CONFIGURE (Autotools) | |
| ################################## | |
| - name: configure hdf5-iotest | |
| run: | | |
| ./autogen.sh | |
| mkdir build; cd build | |
| echo "void main(void){}" > junk.c | |
| echo "$CPPFLAGS" | |
| ls -aolF $HDF5_DIR/* | |
| ls -aolF $HDF5_DIR/bin | |
| ls -aolF $HDF5_DIR/bin/h5pcc | |
| $HDF5_DIR/bin/h5pcc junk.c | |
| CC=$HDF5_DIR/bin/h5pcc ../configure --prefix=$GITHUB_WORKSPACE/build | |
| shell: bash | |
| ################################## | |
| # BUILD HDF5-iotest | |
| ################################## | |
| - name: test hdf5-iotest | |
| run: | | |
| cd build | |
| make | |
| make install | |
| shell: bash |