Merge branch 'develop' into intelLLVM

Fixes ufs-community#879.

fix/link_fixdirs.sh

@@ -9,15 +9,15 @@ set -ex
 #               'nco' (copies data).
 #
 #  $machine - is the machine. Choices are:
-#             'wcoss2', 'hera', 'jet', 'orion', 'hercules', 's4', 'gaea'
+#             'wcoss2', 'hera', 'jet', 'orion', 'hercules', 's4', 'gaeac5', 'gaeac6'
 
 RUN_ENVIR=${1}
 machine=${2}
 
 if [ $# -lt 2 ]; then
     set +x
     echo '***ERROR*** must specify two arguements: (1) RUN_ENVIR, (2) machine'
-    echo ' Syntax: link_fv3gfs.sh ( nco | emc ) ( wcoss2 |  hera  | jet | orion | hercules | s4 | gaea )'
+    echo ' Syntax: link_fv3gfs.sh ( nco | emc ) ( wcoss2 |  hera  | jet | orion | hercules | s4 | gaeac5 | gaeac6 )'
     exit 1
 fi
 
@@ -28,10 +28,10 @@ if [ $RUN_ENVIR != emc -a $RUN_ENVIR != nco ]; then
     exit 1
 fi
 
-if [ $machine != wcoss2 -a $machine != hera -a $machine != jet -a $machine != orion -a $machine != s4 -a $machine != hercules -a $machine != gaea ]; then
+if [ $machine != wcoss2 -a $machine != hera -a $machine != jet -a $machine != orion -a $machine != s4 -a $machine != hercules -a $machine != gaeac5 -a $machine != gaeac6 ]; then
     set +x
     echo '***ERROR*** unsupported machine'
-    echo 'Syntax: link_fv3gfs.sh ( nco | emc ) ( wcoss2 | hera | jet | orion | hercules | s4 | gaea )'
+    echo 'Syntax: link_fv3gfs.sh ( nco | emc ) ( wcoss2 | hera | jet | orion | hercules | s4 | gaeac5 | gaeac6 )'
     exit 1
 fi
 
@@ -54,8 +54,10 @@ elif [ $machine = "wcoss2" ]; then
     FIX_DIR="/lfs/h2/emc/global/noscrub/emc.global/FIX/fix"
 elif [ $machine = "s4" ]; then
     FIX_DIR="/data/prod/glopara/fix"
-elif [ $machine = "gaea" ]; then
+elif [ $machine = "gaeac5" ]; then
     FIX_DIR="/gpfs/f5/ufs-ard/world-shared/global/glopara/data/fix"
+elif [ $machine = "gaeac6" ]; then
+    FIX_DIR="/gpfs/f6/bil-fire8/world-shared/global/glopara/data/fix"
 fi
 
 am_ver=${am_ver:-20220805}

modulefiles/build.container.intel.lua

@@ -0,0 +1,55 @@
+help([[
+Load environment to compile UFS_UTILS in a container using Intel
+]])
+
+prepend_path("MODULEPATH", "/opt/spack-stack/spack-stack-1.8.0/envs/unified-env/install/modulefiles/Core")
+
+stack_intel_ver=os.getenv("stack_intel_ver") or "2021.10.0"
+load(pathJoin("stack-intel", stack_intel_ver))
+
+stack_impi_ver=os.getenv("stack_impi_ver") or "2021.12.1"
+load(pathJoin("stack-intel-oneapi-mpi", stack_impi_ver))
+
+cmake_ver=os.getenv("cmake_ver") or "3.27.9"
+load(pathJoin("cmake", cmake_ver))
+
+bacio_ver=os.getenv("bacio_ver") or "2.4.1"
+load(pathJoin("bacio", bacio_ver))
+
+g2_ver=os.getenv("g2_ver") or "3.5.1"
+load(pathJoin("g2", g2_ver))
+
+ip_ver=os.getenv("ip_ver") or "5.0.0"
+load(pathJoin("ip", ip_ver))
+
+nemsio_ver=os.getenv("nemsio_ver") or "2.5.4"
+load(pathJoin("nemsio", nemsio_ver))
+
+sp_ver=os.getenv("sp_ver") or "2.5.0"
+load(pathJoin("sp", sp_ver))
+
+w3emc_ver=os.getenv("w3emc_ver") or "2.10.0"
+load(pathJoin("w3emc", w3emc_ver))
+
+sigio_ver=os.getenv("sigio_ver") or "2.3.2"
+load(pathJoin("sigio", sigio_ver))
+
+png_ver=os.getenv("png_ver") or "1.6.37"
+load(pathJoin("libpng", png_ver))
+
+netcdf_c_ver=os.getenv("netcdf_c_ver") or "4.9.2"
+load(pathJoin("netcdf-c", netcdf_c_ver))
+
+netcdf_fortran_ver=os.getenv("netcdf_fortran_ver") or "4.6.1"
+load(pathJoin("netcdf-fortran", netcdf_fortran_ver))
+
+nccmp_ver=os.getenv("nccmp_ver") or "1.9.0.1"
+load(pathJoin("nccmp", nccmp_ver))
+
+esmf_ver=os.getenv("esmf_ver") or "8.6.1"
+load(pathJoin("esmf", esmf_ver))
+
+nco_ver=os.getenv("nco_ver") or "5.1.6"
+load(pathJoin("nco", nco_ver))
+
+whatis("Description: UFS_UTILS build environment")

modulefiles/build.gaea.intel.lua → modulefiles/build.gaeac5.intel.lua

@@ -7,10 +7,10 @@ load("hsi")
 
 prepend_path("MODULEPATH", "/ncrc/proj/epic/spack-stack/spack-stack-1.6.0/envs/unified-env/install/modulefiles/Core")
 
-stack_intel_ver=os.getenv("stack_intel_ver") or "2023.1.0"
+stack_intel_ver=os.getenv("stack_intel_ver") or "2023.2.0"
 load(pathJoin("stack-intel", stack_intel_ver))
 
-stack_cray_mpich_ver=os.getenv("stack_cray_mpich_ver") or "8.1.25"
+stack_cray_mpich_ver=os.getenv("stack_cray_mpich_ver") or "8.1.28"
 load(pathJoin("stack-cray-mpich", stack_cray_mpich_ver))
 
 cmake_ver=os.getenv("cmake_ver") or "3.23.1"

modulefiles/build.gaeaC6.intel.lua → modulefiles/build.gaeac6.intel.lua

@@ -1,17 +1,17 @@
 help([[
-Load environment to compile UFS_UTILS on GAEA C6 using Intel
+Load environment to compile UFS_UTILS on Gaea C6 using Intel
 ]])
 
-prepend_path("MODULEPATH", "/autofs/ncrc-svm1_proj/epic/spack-stack/spack-stack-1.6.0/envs/unified-env-c6/install/modulefiles/Core")
+prepend_path("MODULEPATH", "/sw/rdtn/modulefiles")
+load("hsi")
+
+prepend_path("MODULEPATH", "/ncrc/proj/epic/spack-stack/c6/spack-stack-1.6.0/envs/unified-env/install/modulefiles/Core")
 
 stack_intel_ver=os.getenv("stack_intel_ver") or "2023.2.0"
 load(pathJoin("stack-intel", stack_intel_ver))
 
-stack_mpich_ver=os.getenv("stack_mpich_ver") or "8.1.29"
-load(pathJoin("stack-cray-mpich", stack_mpich_ver))
-
-craype_ver=os.getenv("craype_ver") or "2.7.30"
-load(pathJoin("craype", craype_ver))
+stack_cray_mpich_ver=os.getenv("stack_cray_mpich_ver") or "8.1.29"
+load(pathJoin("stack-cray-mpich", stack_cray_mpich_ver))
 
 cmake_ver=os.getenv("cmake_ver") or "3.23.1"
 load(pathJoin("cmake", cmake_ver))
@@ -34,17 +34,18 @@ load(pathJoin("sp", sp_ver))
 w3emc_ver=os.getenv("w3emc_ver") or "2.10.0"
 load(pathJoin("w3emc", w3emc_ver))
 
+-- Uncomment when CHGRES_ALL is ON
+--sfcio_ver=os.getenv("sfcio_ver") or "1.4.1"
+--load(pathJoin("sfcio", sfcio_ver))
+
 sigio_ver=os.getenv("sigio_ver") or "2.3.2"
 load(pathJoin("sigio", sigio_ver))
 
-sfcio_ver=os.getenv("sfcio_ver") or "1.4.1"
-load(pathJoin("sfcio", sfcio_ver))
-
 zlib_ver=os.getenv("zlib_ver") or "1.2.13"
 load(pathJoin("zlib", zlib_ver))
 
-libpng_ver=os.getenv("libpng_ver") or "1.6.37"
-load(pathJoin("libpng", libpng_ver))
+png_ver=os.getenv("png_ver") or "1.6.37"
+load(pathJoin("libpng", png_ver))
 
 netcdf_c_ver=os.getenv("netcdf_c_ver") or "4.9.2"
 load(pathJoin("netcdf-c", netcdf_c_ver))
@@ -55,10 +56,11 @@ load(pathJoin("netcdf-fortran", netcdf_fortran_ver))
 nccmp_ver=os.getenv("nccmp_ver") or "1.9.0.1"
 load(pathJoin("nccmp", nccmp_ver))
 
-esmf_ver=os.getenv("esmf_ver") or "8.5.0"
+esmf_ver=os.getenv("esmf_ver") or "8.6.0"
 load(pathJoin("esmf", esmf_ver))
 
 nco_ver=os.getenv("nco_ver") or "5.0.6"
 load(pathJoin("nco", nco_ver))
 
 whatis("Description: UFS_UTILS build environment")
+

sorc/machine-setup.sh

@@ -30,6 +30,14 @@ if [[ -d /lfs5 ]] ; then
 elif [[ -d /lfs/h1 ]] ; then
     target=wcoss2
     module reset
+elif [[ -d /opt/spack-stack ]] ; then
+    # We are using a container 
+    if ( ! eval module help > /dev/null 2>&1 ) ; then
+        echo load the module command 1>&2
+        source /apps/lmod/lmod/init/$__ms_shell
+    fi
+    target=container
+    module purge
 elif [[ -d /scratch1 ]] ; then
     # We are on NOAA Hera
     if ( ! eval module help > /dev/null 2>&1 ) ; then
@@ -39,7 +47,7 @@ elif [[ -d /scratch1 ]] ; then
     target=hera
     module purge
 elif [[ "$(hostname)" == "gaea5"* && -d /gpfs/f5 ]] ; then
-    # We are on GAEA.
+    # We are on GAEAC5.
     if ( ! eval module help > /dev/null 2>&1 ) ; then
       # We cannot simply load the module command.  The GAEA
       # /etc/profile modifies a number of module-related variables
@@ -49,9 +57,9 @@ elif [[ "$(hostname)" == "gaea5"* && -d /gpfs/f5 ]] ; then
       source /etc/profile
     fi
     module reset
-    target=gaea
+    target=gaeac5
 elif [[ "$(hostname)" == "gaea6"* && -d /gpfs/f6 ]] ; then
-    target=gaeaC6
+    target=gaeac6
     source /opt/cray/pe/lmod/8.7.31/init/$__ms_shell
 elif [[ "$(hostname)" =~ "Orion" || "$(hostname)" =~ "orion" ]]; then
     target="orion"