Make PETSc optional #27485
Workflow file for this run
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| name: DOLFINx CI | |
| on: | |
| push: | |
| branches: | |
| - "**" | |
| tags: | |
| - "v*" | |
| pull_request: | |
| branches: | |
| - main | |
| merge_group: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| inputs: | |
| ffcx_ref: | |
| description: "FFCx branch or tag" | |
| default: "main" | |
| type: string | |
| basix_ref: | |
| description: "Basix branch or tag" | |
| default: "main" | |
| type: string | |
| ufl_ref: | |
| description: "UFL branch or tag" | |
| default: "main" | |
| type: string | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/fenics/test-env:current-openmpi | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: ruff C++ .py file checks | |
| run: | | |
| cd cpp/ | |
| ruff check . | |
| ruff format --check . | |
| - name: ruff Python interface checks | |
| run: | | |
| cd python/ | |
| ruff check . | |
| ruff format --check . | |
| - name: mypy checks | |
| run: | | |
| cd python/ | |
| mypy dolfinx | |
| mypy demo | |
| mypy test | |
| - name: clang-format C++ checks (non-blocking) | |
| continue-on-error: true | |
| run: | | |
| cd cpp | |
| clang-format --version | |
| find . -type f \( -name "*.cpp" -o -name "*.h" \) ! -name "loguru.cpp" | xargs clang-format --dry-run --Werror | |
| - name: clang-format Python binding checks (non-blocking) | |
| continue-on-error: true | |
| run: | | |
| cd python/dolfinx/wrappers | |
| clang-format --version | |
| find . -type f \( -name "*.cpp" -o -name "*.h" \) | xargs clang-format --dry-run --Werror | |
| - name: cmake-format (non-blocking) | |
| continue-on-error: true | |
| run: | | |
| find . -type f \( -name "*.cmake" -o -name "*.cmake.in" -o -name "CMakeLists.txt" \) | xargs cmake-format --check | |
| build: | |
| if: "!(contains(github.event.head_commit.message, '[ci skip]') || contains(github.event.head_commit.message, '[skip ci]'))" | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/fenics/test-env:current-openmpi | |
| env: | |
| OMPI_ALLOW_RUN_AS_ROOT: 1 | |
| OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 | |
| # SCOTCH_ROOT: ${{ vars.PETSC_DIR }}/linux-gnu-real64-32 | |
| steps: | |
| - name: Set SCOTCH dir | |
| run: | | |
| export SCOTCH_DIR=${PETSC_DIR}/linux-gnu-real64-32 | |
| - name: Test arch (1) | |
| run: | | |
| echo "PETSC: ${PETSC_DIR}" | |
| echo "SCOTCH-dir ${SCOTCH_DIR}" | |
| - name: Install FEniCS Python components (default branches/tags) | |
| if: github.event_name != 'workflow_dispatch' | |
| run: | | |
| python3 -m pip install git+https://github.com/FEniCS/ufl.git | |
| python3 -m pip install git+https://github.com/FEniCS/basix.git | |
| python3 -m pip install git+https://github.com/FEniCS/ffcx.git | |
| - name: Install FEniCS Python components | |
| if: github.event_name == 'workflow_dispatch' | |
| run: | | |
| python3 -m pip install git+https://github.com/FEniCS/ufl.git@${{ github.event.inputs.ufl_ref }} | |
| python3 -m pip install git+https://github.com/FEniCS/basix.git@${{ github.event.inputs.basix_ref }} | |
| python3 -m pip install git+https://github.com/FEniCS/ffcx.git@${{ github.event.inputs.ffcx_ref }} | |
| - uses: actions/checkout@v4 | |
| - name: Configure C++ | |
| run: cmake -G Ninja -DDOLFINX_ENABLE_PETSC=false -DCMAKE_BUILD_TYPE=Developer -B build -S cpp/ | |
| - name: Build and install C++ library | |
| run: | | |
| cmake --build build | |
| cmake --install build | |
| - name: Build Python interface | |
| run: python3 -m pip -v install --check-build-dependencies --no-build-isolation --config-settings=cmake.build-type="Debug" python/ | |
| - name: Test Python import | |
| run: python3 -c "import dolfinx; print dolfinx.__version__" | |
| build-with-petsc: | |
| if: "!(contains(github.event.head_commit.message, '[ci skip]') || contains(github.event.head_commit.message, '[skip ci]'))" | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/fenics/test-env:current-openmpi | |
| env: | |
| PETSC_ARCH: ${{ matrix.petsc_arch }} | |
| OMPI_ALLOW_RUN_AS_ROOT: 1 | |
| OMPI_ALLOW_RUN_AS_ROOT_CONFIRM: 1 | |
| strategy: | |
| matrix: | |
| petsc_arch: [linux-gnu-real32-32, linux-gnu-real64-32, linux-gnu-complex64-32, linux-gnu-complex128-32, linux-gnu-real64-64, linux-gnu-complex128-64] | |
| name: Build and test (${{ matrix.petsc_arch }}) | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install FEniCS Python components (default branches/tags) | |
| if: github.event_name != 'workflow_dispatch' | |
| run: | | |
| python3 -m pip install git+https://github.com/FEniCS/ufl.git | |
| python3 -m pip install git+https://github.com/FEniCS/basix.git | |
| python3 -m pip install git+https://github.com/FEniCS/ffcx.git | |
| - name: Install FEniCS Python components | |
| if: github.event_name == 'workflow_dispatch' | |
| run: | | |
| python3 -m pip install git+https://github.com/FEniCS/ufl.git@${{ github.event.inputs.ufl_ref }} | |
| python3 -m pip install git+https://github.com/FEniCS/basix.git@${{ github.event.inputs.basix_ref }} | |
| python3 -m pip install git+https://github.com/FEniCS/ffcx.git@${{ github.event.inputs.ffcx_ref }} | |
| - name: Configure C++ | |
| run: cmake -G Ninja -DCMAKE_BUILD_TYPE=Developer -B build -S cpp/ | |
| - name: Build and install C++ library | |
| run: | | |
| cmake --build build | |
| cmake --install build | |
| - name: Build C++ interface documentation | |
| run: | | |
| export DOLFINX_VERSION=`cmake -L build | grep DOXYGEN_DOLFINX_VERSION | cut -f2 -d "="` | |
| echo $DOLFINX_VERSION | |
| cd cpp/doc | |
| doxygen Doxyfile | |
| make html | |
| - name: Build C++ unit tests | |
| run: | | |
| cmake -G Ninja -DCMAKE_BUILD_TYPE=Developer -B build/test/ -S cpp/test/ | |
| cmake --build build/test --parallel 3 | |
| - name: Run C++ unit tests (serial) | |
| run: | | |
| cd build/test | |
| ctest -V --output-on-failure -R unittests | |
| - name: Run C++ unit tests (MPI) | |
| run: | | |
| cd build/test | |
| mpiexec -np 2 ctest -V --output-on-failure -R unittests | |
| - name: Build and run C++ regression tests (serial and MPI (np=2)) | |
| run: | | |
| cmake -G Ninja -DCMAKE_BUILD_TYPE=Developer -B build/demo/ -S cpp/demo/ | |
| cmake --build build/demo --parallel 3 | |
| cd build/demo | |
| ctest -V -R demo -R serial | |
| ctest -V -R demo -R mpi_2 | |
| - name: Build Python interface | |
| run: | | |
| python3 -m pip -v install --check-build-dependencies --no-build-isolation --config-settings=cmake.build-type="Debug" python/ | |
| - name: Build Python interface documentation | |
| run: | | |
| cd python/doc | |
| python3 -m sphinx -W -b html source/ build/html/ | |
| - name: Set default DOLFINx JIT options | |
| run: | | |
| mkdir -p ~/.config/dolfinx | |
| echo '{ "cffi_extra_compile_args": ["-g0", "-O0" ] }' > ~/.config/dolfinx/dolfinx_jit_options.json | |
| - name: Run demos (Python, serial) | |
| run: python3 -m pytest -n=2 -m serial --durations=10 python/demo/test.py | |
| - name: Run demos (Python, MPI (np=2)) | |
| run: python3 -m pytest -m mpi --num-proc=2 python/demo/test.py | |
| - name: Run Python unit tests (serial) | |
| run: python3 -m pytest -n=auto --durations=50 python/test/unit/ | |
| - name: Run Python unit tests (MPI, np=2) | |
| run: mpirun -np 2 python3 -m pytest python/test/unit/ | |
| - name: Upload C++ documentation artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: doc-cpp-${{ matrix.petsc_arch }} | |
| path: | | |
| cpp/doc/html/ | |
| cpp/doc/build/ | |
| retention-days: 2 | |
| if-no-files-found: error | |
| - name: Upload Python documentation artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: doc-python-${{ matrix.petsc_arch }} | |
| path: | | |
| python/doc/build/html/ | |
| retention-days: 2 | |
| if-no-files-found: error | |
| - name: Checkout FEniCS/docs | |
| if: ${{ github.repository == 'FEniCS/dolfinx' && ( github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/v') ) && runner.os == 'Linux' }} | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: "FEniCS/docs" | |
| path: "docs" | |
| ssh-key: "${{ secrets.SSH_GITHUB_DOCS_PRIVATE_KEY }}" | |
| - name: Set version name | |
| if: ${{ github.repository == 'FEniCS/dolfinx' && ( github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/v') ) && runner.os == 'Linux' }} | |
| run: | | |
| echo "VERSION_NAME=${GITHUB_REF#refs/*/}" >> $GITHUB_ENV | |
| - name: Copy documentation into repository | |
| if: ${{ github.repository == 'FEniCS/dolfinx' && ( github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/v') ) && runner.os == 'Linux' }} | |
| run: | | |
| cd docs | |
| git rm -r --ignore-unmatch dolfinx/${{ env.VERSION_NAME }}/cpp | |
| git rm -r --ignore-unmatch dolfinx/${{ env.VERSION_NAME }}/python | |
| mkdir -p dolfinx/${{ env.VERSION_NAME }}/cpp | |
| mkdir -p dolfinx/${{ env.VERSION_NAME }}/cpp/doxygen | |
| mkdir -p dolfinx/${{ env.VERSION_NAME }}/python | |
| cp -r ../cpp/doc/build/html/* dolfinx/${{ env.VERSION_NAME }}/cpp/ | |
| cp -r ../cpp/doc/html/* dolfinx/${{ env.VERSION_NAME }}/cpp/doxygen | |
| cp -r ../python/doc/build/html/* dolfinx/${{ env.VERSION_NAME }}/python | |
| - name: Commit and push documentation to FEniCS/docs | |
| if: ${{ github.repository == 'FEniCS/dolfinx' && ( github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/tags/v') ) && runner.os == 'Linux' && matrix.petsc_arch == 'linux-gnu-real64-32' }} | |
| run: | | |
| cd docs | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "FEniCS GitHub Actions" | |
| git add --all | |
| git commit --allow-empty -m "C++/Python FEniCS/dolfinx@${{ github.sha }}" | |
| git push |