{2023.6}[2023b,a64fx] ESPResSo 4.2.2 + pyMBE 0.8.0 #782

boegel · 2024-10-11T15:56:48Z

I'm using this PR to verify that the changes made for support builds for dev.eessi.io don't cause trouble for the software.eessi.io builds, so it sits on top of:

tweak scripts to support building for dev.eessi.io repository #771

This PR shouldn't be merged until #771 is merged, so marking it as draft...

eessi-bot · 2024-10-11T15:56:52Z

Instance eessi-bot-mc-aws is configured to build for:

architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
repositories: eessi.io-2023.06-compat, eessi-hpc.org-2023.06-software, eessi-hpc.org-2023.06-compat, eessi.io-2023.06-software

eessi-bot · 2024-10-11T15:56:53Z

Instance eessi-bot-mc-azure is configured to build for:

architectures: x86_64/amd/zen4
repositories: eessi-hpc.org-2023.06-software, eessi-hpc.org-2023.06-compat, eessi.io-2023.06-software, eessi.io-2023.06-compat

boegel · 2024-10-11T15:58:38Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/a64fx

eessi-bot · 2024-10-11T15:58:42Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- no jobs were submitted

eessi-build-deploy-bot-deucalion · 2024-10-11T15:58:42Z

Updates by the bot instance boegel-bot-deucalion (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- submitted job 161293, for details & status see {2023.6}[2023b,a64fx] ESPResSo 4.2.2 + pyMBE 0.8.0 #782 (comment)

eessi-bot · 2024-10-11T15:58:42Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- no jobs were submitted

eessi-build-deploy-bot-deucalion · 2024-10-11T15:58:48Z

New job on instance boegel-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/kehoste/project_dir/bot/jobs/2024.10/pr_782/161293

date	job status	comment
Oct 11 15:58:47 UTC 2024	submitted	job id `161293` awaits release by job manager
Oct 11 15:59:33 UTC 2024	released	job awaits launch by Slurm scheduler
Oct 11 16:00:36 UTC 2024	running	job `161293` is running
Oct 11 22:29:49 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-161293.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-a64fx-1728684016.tar.gz` size: 335 MiB (352166839 bytes) entries: 37026 modules under 2023.06/software/linux/aarch64/a64fx/modules/all `Bison/3.8.2-GCCcore-13.2.0.lua` `Boost.MPI/1.83.0-gompi-2023b.lua` `Brotli/1.1.0-GCCcore-13.2.0.lua` `cppy/1.2.1-GCCcore-13.2.0.lua` `Doxygen/1.9.8-GCCcore-13.2.0.lua` `ESPResSo/4.2.2-foss-2023b.lua` `fontconfig/2.14.2-GCCcore-13.2.0.lua` `freetype/2.13.2-GCCcore-13.2.0.lua` `giflib/5.2.1-GCCcore-13.2.0.lua` `GSL/2.7-GCC-13.2.0.lua` `gzip/1.13-GCCcore-13.2.0.lua` `HDF5/1.14.3-gompi-2023b.lua` `ICU/74.1-GCCcore-13.2.0.lua` `IPython/8.17.2-GCCcore-13.2.0.lua` `jbigkit/2.1-GCCcore-13.2.0.lua` `jedi/0.19.1-GCCcore-13.2.0.lua` `libdeflate/1.19-GCCcore-13.2.0.lua` `libdrm/2.4.117-GCCcore-13.2.0.lua` `libglvnd/1.7.0-GCCcore-13.2.0.lua` `libiconv/1.17-GCCcore-13.2.0.lua` `libjpeg-turbo/3.0.1-GCCcore-13.2.0.lua` `libpng/1.6.40-GCCcore-13.2.0.lua` `libsodium/1.0.19-GCCcore-13.2.0.lua` `LibTIFF/4.6.0-GCCcore-13.2.0.lua` `libunwind/1.6.2-GCCcore-13.2.0.lua` `libwebp/1.3.2-GCCcore-13.2.0.lua` `libxslt/1.1.38-GCCcore-13.2.0.lua` `LittleCMS/2.15-GCCcore-13.2.0.lua` `LLVM/16.0.6-GCCcore-13.2.0.lua` `lxml/4.9.3-GCCcore-13.2.0.lua` `lz4/1.9.4-GCCcore-13.2.0.lua` `Mako/1.2.4-GCCcore-13.2.0.lua` `matplotlib/3.8.2-gfbf-2023b.lua` `Mesa/23.1.9-GCCcore-13.2.0.lua` `NASM/2.16.01-GCCcore-13.2.0.lua` `OpenJPEG/2.5.0-GCCcore-13.2.0.lua` `OpenPGM/5.2.122-GCCcore-13.2.0.lua` `Pillow/10.2.0-GCCcore-13.2.0.lua` `Pint/0.24-GCCcore-13.2.0.lua` `pyMBE/0.8.0-foss-2023b.lua` `Qhull/2020.2-GCCcore-13.2.0.lua` `Szip/2.1.1-GCCcore-13.2.0.lua` `Tk/8.6.13-GCCcore-13.2.0.lua` `Tkinter/3.11.5-GCCcore-13.2.0.lua` `tqdm/4.66.2-GCCcore-13.2.0.lua` `Wayland/1.22.0-GCCcore-13.2.0.lua` `X11/20231019-GCCcore-13.2.0.lua` `ZeroMQ/4.3.5-GCCcore-13.2.0.lua` `zstd/1.5.5-GCCcore-13.2.0.lua` software under 2023.06/software/linux/aarch64/a64fx/software `Bison/3.8.2-GCCcore-13.2.0` `Boost.MPI/1.83.0-gompi-2023b` `Brotli/1.1.0-GCCcore-13.2.0` `cppy/1.2.1-GCCcore-13.2.0` `Doxygen/1.9.8-GCCcore-13.2.0` `ESPResSo/4.2.2-foss-2023b` `fontconfig/2.14.2-GCCcore-13.2.0` `freetype/2.13.2-GCCcore-13.2.0` `giflib/5.2.1-GCCcore-13.2.0` `GSL/2.7-GCC-13.2.0` `gzip/1.13-GCCcore-13.2.0` `HDF5/1.14.3-gompi-2023b` `ICU/74.1-GCCcore-13.2.0` `IPython/8.17.2-GCCcore-13.2.0` `jbigkit/2.1-GCCcore-13.2.0` `jedi/0.19.1-GCCcore-13.2.0` `libdeflate/1.19-GCCcore-13.2.0` `libdrm/2.4.117-GCCcore-13.2.0` `libglvnd/1.7.0-GCCcore-13.2.0` `libiconv/1.17-GCCcore-13.2.0` `libjpeg-turbo/3.0.1-GCCcore-13.2.0` `libpng/1.6.40-GCCcore-13.2.0` `libsodium/1.0.19-GCCcore-13.2.0` `LibTIFF/4.6.0-GCCcore-13.2.0` `libunwind/1.6.2-GCCcore-13.2.0` `libwebp/1.3.2-GCCcore-13.2.0` `libxslt/1.1.38-GCCcore-13.2.0` `LittleCMS/2.15-GCCcore-13.2.0` `LLVM/16.0.6-GCCcore-13.2.0` `lxml/4.9.3-GCCcore-13.2.0` `lz4/1.9.4-GCCcore-13.2.0` `Mako/1.2.4-GCCcore-13.2.0` `matplotlib/3.8.2-gfbf-2023b` `Mesa/23.1.9-GCCcore-13.2.0` `NASM/2.16.01-GCCcore-13.2.0` `OpenJPEG/2.5.0-GCCcore-13.2.0` `OpenPGM/5.2.122-GCCcore-13.2.0` `Pillow/10.2.0-GCCcore-13.2.0` `Pint/0.24-GCCcore-13.2.0` `pyMBE/0.8.0-foss-2023b` `Qhull/2020.2-GCCcore-13.2.0` `Szip/2.1.1-GCCcore-13.2.0` `Tk/8.6.13-GCCcore-13.2.0` `Tkinter/3.11.5-GCCcore-13.2.0` `tqdm/4.66.2-GCCcore-13.2.0` `Wayland/1.22.0-GCCcore-13.2.0` `X11/20231019-GCCcore-13.2.0` `ZeroMQ/4.3.5-GCCcore-13.2.0` `zstd/1.5.5-GCCcore-13.2.0` other under 2023.06/software/linux/aarch64/a64fx `2023.06/init/minimal_eessi_env`
Oct 11 22:29:49 UTC 2024	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-161293.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Oct 12 20:16:06 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-a64fx-1728684016.tar.gz` to S3 bucket succeeded

boegel · 2024-10-13T08:08:21Z

@bedroge The 2023.06/init/minimal_eessi_env that's being deployed in here is due to the changes to it in #771, we should've done a build & deploy in there...

bedroge · 2024-10-14T08:45:19Z

This was deployed and ingested, but it turned out that this somehow included a wrong/old and broken version of minimal_eessi_env, so I've rolled back the transaction. We should do a rebuild here to make sure that the latest version is included, or do this in a separate PR.

boegel · 2024-10-14T09:13:04Z

This was deployed and ingested, but it turned out that this somehow included a wrong/old and broken version of minimal_eessi_env, so I've rolled back the transaction. We should do a rebuild here to make sure that the latest version is included, or do this in a separate PR.

The build was done before the commit that adds a guard for $EESSI_COMPAT_LAYER_DIR being defined was added, see 1afc599

Easiest way forward is just doing the build again here, which should pick up on the correct init/minimal_eessi_env...

boegel · 2024-10-14T09:13:08Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/a64fx

eessi-bot · 2024-10-14T09:13:11Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- no jobs were submitted

eessi-bot · 2024-10-14T09:13:12Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- no jobs were submitted

eessi-build-deploy-bot-deucalion · 2024-10-14T09:13:12Z

Updates by the bot instance boegel-bot-deucalion (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx
handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:
- submitted job 167582, for details & status see {2023.6}[2023b,a64fx] ESPResSo 4.2.2 + pyMBE 0.8.0 #782 (comment)

eessi-build-deploy-bot-deucalion · 2024-10-14T09:13:24Z

New job on instance boegel-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/kehoste/project_dir/bot/jobs/2024.10/pr_782/167582

date	job status	comment
Oct 14 09:13:22 UTC 2024	submitted	job id `167582` awaits release by job manager
Oct 14 09:14:05 UTC 2024	released	job awaits launch by Slurm scheduler
Oct 14 09:15:09 UTC 2024	running	job `167582` is running
Oct 14 15:34:54 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-167582.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-a64fx-1728918317.tar.gz` size: 335 MiB (352175732 bytes) entries: 37026 modules under 2023.06/software/linux/aarch64/a64fx/modules/all `Bison/3.8.2-GCCcore-13.2.0.lua` `Boost.MPI/1.83.0-gompi-2023b.lua` `Brotli/1.1.0-GCCcore-13.2.0.lua` `cppy/1.2.1-GCCcore-13.2.0.lua` `Doxygen/1.9.8-GCCcore-13.2.0.lua` `ESPResSo/4.2.2-foss-2023b.lua` `fontconfig/2.14.2-GCCcore-13.2.0.lua` `freetype/2.13.2-GCCcore-13.2.0.lua` `giflib/5.2.1-GCCcore-13.2.0.lua` `GSL/2.7-GCC-13.2.0.lua` `gzip/1.13-GCCcore-13.2.0.lua` `HDF5/1.14.3-gompi-2023b.lua` `ICU/74.1-GCCcore-13.2.0.lua` `IPython/8.17.2-GCCcore-13.2.0.lua` `jbigkit/2.1-GCCcore-13.2.0.lua` `jedi/0.19.1-GCCcore-13.2.0.lua` `libdeflate/1.19-GCCcore-13.2.0.lua` `libdrm/2.4.117-GCCcore-13.2.0.lua` `libglvnd/1.7.0-GCCcore-13.2.0.lua` `libiconv/1.17-GCCcore-13.2.0.lua` `libjpeg-turbo/3.0.1-GCCcore-13.2.0.lua` `libpng/1.6.40-GCCcore-13.2.0.lua` `libsodium/1.0.19-GCCcore-13.2.0.lua` `LibTIFF/4.6.0-GCCcore-13.2.0.lua` `libunwind/1.6.2-GCCcore-13.2.0.lua` `libwebp/1.3.2-GCCcore-13.2.0.lua` `libxslt/1.1.38-GCCcore-13.2.0.lua` `LittleCMS/2.15-GCCcore-13.2.0.lua` `LLVM/16.0.6-GCCcore-13.2.0.lua` `lxml/4.9.3-GCCcore-13.2.0.lua` `lz4/1.9.4-GCCcore-13.2.0.lua` `Mako/1.2.4-GCCcore-13.2.0.lua` `matplotlib/3.8.2-gfbf-2023b.lua` `Mesa/23.1.9-GCCcore-13.2.0.lua` `NASM/2.16.01-GCCcore-13.2.0.lua` `OpenJPEG/2.5.0-GCCcore-13.2.0.lua` `OpenPGM/5.2.122-GCCcore-13.2.0.lua` `Pillow/10.2.0-GCCcore-13.2.0.lua` `Pint/0.24-GCCcore-13.2.0.lua` `pyMBE/0.8.0-foss-2023b.lua` `Qhull/2020.2-GCCcore-13.2.0.lua` `Szip/2.1.1-GCCcore-13.2.0.lua` `Tk/8.6.13-GCCcore-13.2.0.lua` `Tkinter/3.11.5-GCCcore-13.2.0.lua` `tqdm/4.66.2-GCCcore-13.2.0.lua` `Wayland/1.22.0-GCCcore-13.2.0.lua` `X11/20231019-GCCcore-13.2.0.lua` `ZeroMQ/4.3.5-GCCcore-13.2.0.lua` `zstd/1.5.5-GCCcore-13.2.0.lua` software under 2023.06/software/linux/aarch64/a64fx/software `Bison/3.8.2-GCCcore-13.2.0` `Boost.MPI/1.83.0-gompi-2023b` `Brotli/1.1.0-GCCcore-13.2.0` `cppy/1.2.1-GCCcore-13.2.0` `Doxygen/1.9.8-GCCcore-13.2.0` `ESPResSo/4.2.2-foss-2023b` `fontconfig/2.14.2-GCCcore-13.2.0` `freetype/2.13.2-GCCcore-13.2.0` `giflib/5.2.1-GCCcore-13.2.0` `GSL/2.7-GCC-13.2.0` `gzip/1.13-GCCcore-13.2.0` `HDF5/1.14.3-gompi-2023b` `ICU/74.1-GCCcore-13.2.0` `IPython/8.17.2-GCCcore-13.2.0` `jbigkit/2.1-GCCcore-13.2.0` `jedi/0.19.1-GCCcore-13.2.0` `libdeflate/1.19-GCCcore-13.2.0` `libdrm/2.4.117-GCCcore-13.2.0` `libglvnd/1.7.0-GCCcore-13.2.0` `libiconv/1.17-GCCcore-13.2.0` `libjpeg-turbo/3.0.1-GCCcore-13.2.0` `libpng/1.6.40-GCCcore-13.2.0` `libsodium/1.0.19-GCCcore-13.2.0` `LibTIFF/4.6.0-GCCcore-13.2.0` `libunwind/1.6.2-GCCcore-13.2.0` `libwebp/1.3.2-GCCcore-13.2.0` `libxslt/1.1.38-GCCcore-13.2.0` `LittleCMS/2.15-GCCcore-13.2.0` `LLVM/16.0.6-GCCcore-13.2.0` `lxml/4.9.3-GCCcore-13.2.0` `lz4/1.9.4-GCCcore-13.2.0` `Mako/1.2.4-GCCcore-13.2.0` `matplotlib/3.8.2-gfbf-2023b` `Mesa/23.1.9-GCCcore-13.2.0` `NASM/2.16.01-GCCcore-13.2.0` `OpenJPEG/2.5.0-GCCcore-13.2.0` `OpenPGM/5.2.122-GCCcore-13.2.0` `Pillow/10.2.0-GCCcore-13.2.0` `Pint/0.24-GCCcore-13.2.0` `pyMBE/0.8.0-foss-2023b` `Qhull/2020.2-GCCcore-13.2.0` `Szip/2.1.1-GCCcore-13.2.0` `Tk/8.6.13-GCCcore-13.2.0` `Tkinter/3.11.5-GCCcore-13.2.0` `tqdm/4.66.2-GCCcore-13.2.0` `Wayland/1.22.0-GCCcore-13.2.0` `X11/20231019-GCCcore-13.2.0` `ZeroMQ/4.3.5-GCCcore-13.2.0` `zstd/1.5.5-GCCcore-13.2.0` other under 2023.06/software/linux/aarch64/a64fx `2023.06/init/minimal_eessi_env`
Oct 14 15:34:54 UTC 2024	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-167582.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Oct 14 15:49:02 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-a64fx-1728918317.tar.gz` to S3 bucket succeeded

boegel · 2024-10-14T15:48:31Z

@bedroge Can you verify that the init/minimal_eessi_env in the tarball is correct now?

bedroge · 2024-10-14T17:13:25Z

@bedroge Can you verify that the init/minimal_eessi_env in the tarball is correct now?

Extracted the tarball and did a diff with the file from the software-layer repo:

[bob@multixscale-stratum0 tmp]$ diff 2023.06/init/minimal_eessi_env software-layer/init/minimal_eessi_env 
[bob@multixscale-stratum0 tmp]$

And, indeed, the file now has:

# set $EPREFIX since that is basically a standard in Gentoo Prefix
# if $EESSI_COMPAT_LAYER_DIR is defined (for example by run_in_compat_layer_env.sh script), we use that value
if [ ! -z ${EESSI_COMPAT_LAYER_DIR} ]; then
    export EPREFIX=$EESSI_COMPAT_LAYER_DIR
else
    export EPREFIX=$EESSI_PREFIX/compat/$EESSI_OS_TYPE/$EESSI_CPU_FAMILY
fi

So, looks good to me now.

eessi-bot · 2024-10-14T19:39:14Z

PR merged! Moved [] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2024.10.14

eessi-bot · 2024-10-14T19:39:15Z

PR merged! Moved [] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2024.10.14

boegel added 2 commits October 11, 2024 17:50

Merge branch '2023.06-software.eessi.io' into feature/dev.eessi.io_TEST

845865a

{2023.6}[2023b,a64fx] ESPResSo 4.2.2 + pyMBE 0.8.0

acc2f08

boegel added 2023.06-software.eessi.io 2023.06 version of software.eessi.io a64fx labels Oct 11, 2024

boegel mentioned this pull request Oct 12, 2024

tweak scripts to support building for dev.eessi.io repository #771

Merged

Merge branch '2023.06-software.eessi.io' into feature/dev.eessi.io_TEST

95b31b8

boegel marked this pull request as ready for review October 12, 2024 14:12

bedroge approved these changes Oct 12, 2024

View reviewed changes

boegel added the bot:deploy Ask bot to deploy missing software installations to EESSI label Oct 12, 2024

boegel added bot:deploy Ask bot to deploy missing software installations to EESSI and removed bot:deploy Ask bot to deploy missing software installations to EESSI labels Oct 14, 2024

bedroge merged commit 024e44c into EESSI:2023.06-software.eessi.io Oct 14, 2024
42 checks passed

boegel deleted the feature/dev.eessi.io_TEST branch October 15, 2024 06:32

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{2023.6}[2023b,a64fx] ESPResSo 4.2.2 + pyMBE 0.8.0 #782

{2023.6}[2023b,a64fx] ESPResSo 4.2.2 + pyMBE 0.8.0 #782

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{2023.6}[2023b,a64fx] ESPResSo 4.2.2 + pyMBE 0.8.0 #782

{2023.6}[2023b,a64fx] ESPResSo 4.2.2 + pyMBE 0.8.0 #782

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