Fix errors, add try excepts to monitoring plots #253
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: on-push | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - '*' | |
| pull_request: | |
| branches: | |
| - main | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| pre-commit: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.x | |
| - uses: pre-commit/[email protected] | |
| combine-environments: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install conda-merge | |
| run: | | |
| $CONDA/bin/python -m pip install conda-merge | |
| - name: Combine environments | |
| run: | | |
| for SUFFIX in ci integration; do | |
| $CONDA/bin/conda-merge ci/environment-$SUFFIX.yml environment.yml > ci/combined-environment-$SUFFIX.yml || exit | |
| done | |
| - name: Archive combined environments | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: combined-environments | |
| path: ci/combined-environment-*.yml | |
| unit-tests: | |
| name: unit-tests | |
| needs: combine-environments | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.10', '3.11'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Download combined environments | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: combined-environments | |
| path: ci | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: ci/combined-environment-ci.yml | |
| environment-name: DEVELOP | |
| cache-environment: true | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| - name: Install package | |
| run: | | |
| python -m pip install --no-deps -e . | |
| - name: Run tests | |
| run: | | |
| make unit-tests COV_REPORT=xml | |
| type-check: | |
| needs: [combine-environments, unit-tests] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Download combined environments | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: combined-environments | |
| path: ci | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: ci/combined-environment-ci.yml | |
| environment-name: DEVELOP | |
| cache-environment: true | |
| create-args: >- | |
| python=3.10 | |
| - name: Install package | |
| run: | | |
| python -m pip install --no-deps -e . | |
| - name: Run code quality checks | |
| run: | | |
| make type-check | |
| docs-build: | |
| needs: [combine-environments, unit-tests] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Download combined environments | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: combined-environments | |
| path: ci | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: ci/combined-environment-ci.yml | |
| environment-name: DEVELOP | |
| cache-environment: true | |
| create-args: >- | |
| python=3.10 | |
| - name: Install package | |
| run: | | |
| python -m pip install --no-deps -e . | |
| - name: Build documentation | |
| run: | | |
| make docs-build | |
| integration-tests: | |
| needs: [combine-environments, unit-tests] | |
| if: | | |
| success() && false | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| include: | |
| - python-version: '3.10' | |
| extra: -integration | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Download combined environments | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: combined-environments | |
| path: ci | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: ci/combined-environment${{ matrix.extra }}.yml | |
| environment-name: DEVELOP${{ matrix.extra }} | |
| cache-environment: true | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| - name: Install package | |
| run: | | |
| python -m pip install --no-deps -e . | |
| - name: Run tests | |
| run: | | |
| make unit-tests COV_REPORT=xml | |
| distribution: | |
| runs-on: ubuntu-latest | |
| needs: [unit-tests, type-check, docs-build, integration-tests] | |
| if: | | |
| always() && | |
| needs.unit-tests.result == 'success' && | |
| needs.type-check.result == 'success' && | |
| needs.docs-build.result == 'success' && | |
| (needs.integration-tests.result == 'success' || needs.integration-tests.result == 'skipped') | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install packages | |
| run: | | |
| $CONDA/bin/python -m pip install build twine | |
| - name: Build distributions | |
| run: | | |
| $CONDA/bin/python -m build | |
| - name: Check wheels | |
| run: | | |
| cd dist || exit | |
| $CONDA/bin/python -m pip install DeepR*.whl || exit | |
| $CONDA/bin/python -m twine check * || exit | |
| $CONDA/bin/python -c "import deepr" | |
| - name: Publish a Python distribution to PyPI | |
| if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_API_TOKEN }} |