Repository for alignment datasets
Zipped file of the nucleotide and amino-acid dataset used in Courcelle, Tilak, Leite, douzery & Fabre 2018 Digging for the spiny rat and hutia phylogeny using a gene capture approach, with the description of a new mammal subfamily Submitted: Molecular Phylogenetics and Evolution, Nov, 8, 2018
These nexus files contain, for nucleotide (NT) and amino-acid (AA) datasets respectively:
- raw concatenated alignments of 483 exons for the 40 species studied
- exons boundaries in the concatenated file
- a PAUP executable command line masking sites with more than 20% of ambiguous character states and gaps