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enable easier provenance collection (#27)
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Co-authored-by: John Palmer <[email protected]>
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jpalmer37 and jpalmer37 authored Jul 2, 2024
1 parent e315157 commit f7c10e7
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3 changes: 3 additions & 0 deletions fluviewer/cli_args.py
Original file line number Diff line number Diff line change
Expand Up @@ -2,6 +2,8 @@
import os
from pathlib import Path

from . import __version__

def parse_args():
"""
Parse command line arguments using argparse.
Expand All @@ -27,6 +29,7 @@ def parse_args():
parser.add_argument('-M', '--max-memory', type=int, metavar="[1-]", help='Gigabytes of memory allocated for normalizing reads (default=max)')
parser.add_argument('-g', '--disable-garbage-collection', action='store_true', help='Disable garbage collection and retain intermediate analysis files')
parser.add_argument('--log-level', default='info', choices=['info', 'debug'], help='Log level (default=info)')
parser.add_argument('--version', action='version', version=__version__)

args = parser.parse_args()

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