test fixes #1081
Workflow file for this run
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| name: Test and Lint | |
| on: pull_request | |
| # Cancel actions when new commits are pushed to PR | |
| concurrency: | |
| group: ${{ github.head_ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test-core-lib: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [3.9, '3.10', 3.11] | |
| os: [ | |
| ubuntu-latest, | |
| windows-latest, | |
| macos-latest, | |
| ] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Setup Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install .[test] | |
| - uses: actions/cache@v2 | |
| id: cache | |
| with: | |
| path: aicsimageio/tests/resources | |
| key: ${{ hashFiles('scripts/TEST_RESOURCES_HASH.txt') }} | |
| - name: Download Test Resources | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| run: | | |
| python scripts/download_test_resources.py --debug | |
| - name: Run tests with Tox | |
| # Run tox using the version of Python in `PATH` | |
| run: tox -e py | |
| - name: Upload codecov | |
| uses: codecov/codecov-action@v2 | |
| test-readers: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [3.9, '3.10', 3.11] | |
| os: [ | |
| ubuntu-20.04, | |
| windows-latest, | |
| macos-11, | |
| ] | |
| tox-env: [ | |
| bioformats, | |
| czi, | |
| base-imageio, | |
| dv, | |
| lif, | |
| nd2, | |
| sldy, | |
| bfio, | |
| omezarr, | |
| ] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Setup Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/setup-java@v2 | |
| with: | |
| distribution: "temurin" | |
| java-version: "11" | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install .[test] | |
| - uses: actions/cache@v2 | |
| id: cache | |
| with: | |
| path: aicsimageio/tests/resources | |
| key: ${{ hashFiles('scripts/TEST_RESOURCES_HASH.txt') }} | |
| - name: Download Test Resources | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| run: | | |
| python scripts/download_test_resources.py --debug | |
| - name: Run tests with Tox | |
| run: tox -e ${{ matrix.tox-env }} | |
| - name: Upload codecov | |
| uses: codecov/codecov-action@v2 | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: true | |
| - name: Set up Python | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: 3.11 | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install pre-commit | |
| - name: Lint | |
| run: pre-commit run --all-files --show-diff-on-failure | |
| docs: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| submodules: true | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.11 | |
| - name: Install Dependencies | |
| run: | | |
| pip install --upgrade pip | |
| pip install .[dev] | |
| - name: Generate Docs | |
| run: | | |
| gitchangelog | |
| make gen-docs |