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refactor: reduce memory usage of comparing alignments #158

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balajtimate opened this issue Jan 18, 2024 · 0 comments
Open

refactor: reduce memory usage of comparing alignments #158

balajtimate opened this issue Jan 18, 2024 · 0 comments
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future Will not be worked on for now low_priority Not urgent

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@balajtimate
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Is your feature request related to a problem? Please describe.
Currently, the _align_mates function in get_library_type.py uses a lot of memory to store the alignments from both input samples and compare them to find concordant mates.

Describe the solution you'd like
Implement a memory-efficient solution to compare alignments on the fly without the need to actually store both alignments in memory.

@balajtimate balajtimate added low_priority Not urgent future Will not be worked on for now labels Jan 18, 2024
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Labels
future Will not be worked on for now low_priority Not urgent
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