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This file describes the authorship and change history of each function in BCT.
At least, as much authorship that is noted in the documentation.
In addition references to scientific literature are provided where available
This file was last updated in 2014
ADJACENCY_PLOT_UND
Richard Betzel Indiana University 2013
AGREEMENT
(agreement agreement_weighted)
Richard Betzel Indiana University 2013
ALIGN_MATRICES
Yusuke Adachi University of Tokyo 2010
Olaf Sporns Indiana University 2010
ASSORTATIVITY
(assortativity_bin assortativity_wei)
Olaf Sporns Indiana University 2007/2008
Vassilis Tsiaras University of Crete 2009
Murray Shanahan Imperial College London 2012
Mika Rubinov University of Cambridge 2012
Newman (2002) Phys Rev Lett 89:208701
Foster et al. (2010) PNAS 107:1081510820
BACKBONE_WU
Olaf Sporns Indiana University 2007/2008/2010/2012
Hidalgo et al. (2007) Science 317, 482.
Hagmann et al. (2008) PLoS Biol
BETWEENNESS
(betweenness_bin betweenness_wei)
Mika Rubinov UNSW/Cambridge 2007-2012
Brandes (2001) J Math Sociol 25:163-177.
Kintali (2008) arXiv:0809.1906v2 [cs.DS]
BREADTH
(breadth breadthdist reachdist)
Olaf Sporns Indiana University 2002/2007/2008
CHARPATH
Olaf Sporns Indiana University 2002/2007/2008
Mika Rubinov U New South Wales 2010
CLUSTERING_COEF
(clustering_coef_bd clustering_coef_bu clustering_coef_wd clustering_coef_wu)
Mika Rubinov U New South Wales 2007-2010
Watts and Strogatz (1998) Nature 393:440-442.
Onnela et al. (2005) Phys Rev E 71:065103
Fagiolo (2007) Phys Rev E 76:026107.
CONSENSUS_UND
Richard Betzel Indiana University 2013
Lancichinetti & Fortunato (2012). Scientific Reports.
CYCPROB
Olaf Sporns Indiana University 2002/2007/2008
DEGREES
(degrees_dir degrees_und)
Olaf Sporns Indiana University 2002/2006/2008
DENSITY
(density_dir density_und)
Olaf Sporns Indiana University 2002/2007/2008
Tony Herdman SFU 2009/2010
DISTANCE
(distance_bin distance_wei distance_wei_floyd)
Mika Rubinov UNSW/Cambridge 2007-2012
Richard Betzel Indiana University 2012
Andrea Avena Indiana University 2012
Jonathan Clayden UCL 2013
DIVERSITY_COEF_SIGN
Mika Rubinov UNSW/Cambridge 2011
Alex Fornito 2012
Martin Monti 2012
Shannon CE (1948) Bell Syst Tech J 27, 379423.
Rubinov and Sporns (2011) NeuroImage.
EDGE_BETWEENNESS
(edge_betweenness_bin edge_betweenness_wei)
Mika Rubinov UNSW/Cambridge 2007-2012
Brandes (2001) J Math Sociol 25:163-177.
EDGE_NEI_OVERLAP
(edge_nei_overlap_bd edge_nei_overlap_bu)
Olaf Sporns Indiana University 2012
Easley and Kleinberg (2010) Networks, Crowds, and Markets.
EFFICIENCY
(efficiency_bin efficiency_wei)
Mika Rubinov UNSW/Cambridge 2008-2013
Jonathan Clayden UCL 2013
Latora and Marchiori (2001) Phys Rev Lett 87:198701.
Onnela et al. (2005) Phys Rev E 71:065103
Fagiolo (2007) Phys Rev E 76:026107.
Rubinov M, Sporns O (2010) NeuroImage 52:1059-69
EIGENVECTOR_CENTRALITY
Xi-Nian Zuo Chinese Acad. Sciences 2010
Richard Betzel Indiana University 2012
Newman, MEJ (2002). The mathematics of networks.
ERANGE
Olaf Sporns Indiana University 2002/2007/2008
FINDPATHS
(findpaths findwalks)
Olaf Sporns Indiana University 2002/2007/2008/2010
Steve Williams 2010
FLOW_COEF
Olaf Sporns Indiana University 2007/2010/2012
Honey et al. (2007) Proc Natl Acad Sci USA
GET_COMPONENTS
J Goni U Navarra/ Indiana U 2009/2011
GRID_COMMUNITIES
Richard Betzel Indiana University 2012
GTOM
J Goni U Navarra/ Indiana U 2009/2011
Yip & Horvath (2007) BMC Bioinformatics 2007, 8:22
Ravasz et al (2002) Science 297 (5586), 1551.
JDEGREE
Olaf Sporns Indiana University 2002/2006/2008
KCORE
(kcore_bd kcore_bu kcoreness_centrality_bd kcoreness_centrality_bu)
Olaf Sporns Indiana University 2007-2012
Hagmann et al. (2008) PLoS Biology
LATMIO
(latmio_dir latmio_dir_connected latmio_und latmio_und_connected)
Mika Rubinov UNSW 2007-2010
Jonathan Power Washington U St Louis 2008
Olaf Sports Indiana University 2012
Maslov and Sneppen (2002) Science 296:910
Sporns and Zwi (2004) Neuroinformatics 2:145
MAKE VARIOUS REGULAR/RANDOM NETWORKS
(makeevenCIJ makefractalCIJ makelatticeCIJ makerandCIJ_dir makerandCIJ_und
makerandCIJdegreesfixes makeringlatticeCIJ maketoeplitzCIJ)
Olaf Sporns Indiana University 2005/2007/2008
MATCHING_IND
(matching_ind matching_ind_und)
Olaf Sporns Indiana University 2002/2007/2008
Richard Betzel Indiana University 2013
MEAN FIRST PASSAGE TIME
(mean_first_passage_time)
Joaquin Goñi Indiana University 2012
MODULARITY
(modularity_dir modularity_und)
Mika Rubinov UNSW/Cambridge 2008-2013
Jonathan Power Washington U St Louis 2008
Dani Bassett UC Santa Barbara 2010
Alexandros Goulas Maastricht University
Mason Porter Oxford University
Jack Setford Oxford University
Leicht and Newman (2008) Phys Rev Lett 100:118703.
Reichardt and Bornholdt (2006) Phys Rev E 74:016110.
Also see Good et al. (2010) Phys. Rev. E 81:046106.
MODULARITY_FINETUNE
(modularity_finetune_dir modularity_finetune_und modularity_finetune_und_sign
modularity_probtune_und_sign)
Mika Rubinov UNSW/Cambridge 2011/2013
Sun et al. (2009) Europhysics Lett 86, 28004.
Rubinov and Sporns (2011) NeuroImage.
MODULARITY_LOUVAIN
(modularity_louvain_dir modularity_louvain_und modularity_louvain_und_sign)
Mika Rubinov UNSW/Cambridge 2010/2011/2013
Blondel et al. (2008) J. Stat. Mech. P10008.
Reichardt and Bornholdt (2006) Phys. Rev. E 74, 016110.
Rubinov and Sporns (2011) NeuroImage.
MODULE_DEGREE_ZSCORE
Mika Rubinov UNSW 2008-2010
Guimera R, Amaral L. Nature (2005) 433:895-900.
MOTIFS
Mika Rubinov UNSW 2007/2008
Onnela et al. (2005) Phys Rev E 71:065103
NBS
Andrew Zalesky U Melbourne 2010
Zalesky A, Fornito A, Bullmore ET (2010) NeuroImage.10.1016
NULL_MODEL
(null_model_dir_sign null_model_und_sign)
Mika Rubinov U Cambridge 2011/2012
Rubinov and Sporns (2011) Neuroimage 56:2068-79
PAGERANK_CENTRALITY
Xi-Nian Zuo Chinese Acad. Sciences 2011
Richard Betzel Indiana University 2012
Morrison JL et al (2005) BMC Bioinformatics, 6:233
Boldi P, Santini M, Vigna S (2009) ACM Trans Inf Syst 27, 1-23.
PARTICIPATION_COEF
(participation_coef participation_coef_sign)
Mika Rubinov UNSW/Cambridge 2008
Alex Fornito U Melbourne 2011-2012
Martin Monti 2012
Guimera R, Amaral L. Nature (2005) 433:895-900.
PARTITION_DISTANCE
Mika Rubinov UNSW/Cambridge 2011
Meila M (2007) J Multivar Anal 98, 873-895.
RANDMIO
(randmio_dir randmio_dir_connected randmio_und randmio_und_connected
randmio_und_signed)
Mika Rubinov UNSW/Cambridge 2007
Jonathan Power Washington U St Louis 2008
Dani Bassett UC Santa Barbara 2011
Olaf Sporns Indiana University 2012
Maslov and Sneppen (2002) Science 296:910
RANDOMIZE_GRAPH_PARTIAL_UND
Richard Betzel Indiana University 2013
RANDOMIZER_BIN_UND
Jonathan Power Washington U St Louis 2010
Maslov and Sneppen (2002) Science 296:910
RENTIAN_SCALING
Danielle Bassett UC Santa Barbara 2010
Bassett DS et al. (2010) PLoS Comput Biol 6(4):e1000748
REORDER_MAT
(reorder_MAT reorder_matrix reorder_mod)
Yusuke Adachi University of Tokyo 2010
Olaf Sporns Indiana University 2010
Mika Rubinov UNSW/Cambridge 2011
RETRIEVE_SHORTEST_PATH
(retrieve_shortest_path)
Andrea Avena Indiana University 2012
Joaquin Goñi Indiana University 2012
RICH_CLUB
(rich_club_bd rich_club_bu rich_club_wd rich_club_wu)
Martijn van den Heuvel Univ. Med. Ctr. Utrecht 2011
Colizza et al. (2006) Nat. Phys. 2:110.
Opsahl et al. Phys Rev Lett, 2008, 101(16)
Martijn van den Heuvel, University Medical Center Utrecht, 2011
SEARCH INFORMATION
(search_information)
Andrea Avena Indiana University 2014
Joaquin Goñi Indiana University 2014
SCORE
Olaf Sporns Indiana University 2007/2008/2010/2012
STRENGTHS
(strengths_dir strengths_und strengths_und_sign)
Olaf Sporns Indiana University 2002/2006/2008
Mika Rubinov UNSW/Cambridge 2011
SUBGRAPH_CENTRALITY
Xi-Nian Zuo Chinese Acad. Sciences 2010
Richard Betzel Indiana University 2012
Estrada and Rodriguez-Velasquez (2005) Phys Rev E 71, 056103
Estrada and Higham (2010) SIAM Rev 52, 696.
THRESHOLD
(threshold_absolute threshold_proportional)
Mika Rubinov UNSW/Cambridge 2009-2010
Roan LaPlante Martinos Ctr, MGH 2012
TRANSITIVITY
(transitivity_bd transitivity_bu transitivity_wd transitivity_wu)
Mika Rubinov UNSW/Cambridge 2007
Alexandros Goulas Maastricht U 2010
Christoph Schmidt F. Schiller U. Jena 2013
Rubinov M, Sporns O (2010) NeuroImage 52:1059-69
Onnela et al. (2005) Phys Rev E 71:065103
Fagiolo (2007) Phys Rev E 76:026107.
Humphries et al. (2008) Plos ONE 3: e0002051
WEIGHT_CONVERSION
Mika Rubinov U Cambridge 2012
WRITE_TO_PAJ
Christopher Honey Indiana University 2007