compile parallel netcdf_mpich.txt

0. Load modules for compiling
  	At mt moran
      		module load gnu/4.4.6
      		module load mpich/3.0.4cd
  	usu HPC
      		reuse .mpich-3.1.1-slurm   
   
1. install curl
 ./configure --prefix=/path to installation directory
 
make install

2. install zlib
wget http://zlib.net/zlib-1.2.8.tar.giz

 ./configure --prefix=/path to installation directory

make install

3. to use pnetcdf build parallel-netcdf

Get pnetcdf (https://trac.mcs.anl.gov/projects/parallel-netcdf)

 ./configure --prefix=/path to installation directory

make install

4. build Hdf5 with zlib and enable-parallel

Get HDF5 (https://www.hdfgroup.org/HDF5)

LIBS=-ldl CC=mpicc ./configure --enable-parallel --prefix=/path to installation directory --with-zlib=/path to installation directory

make install

5. build netcdf

LIBS=-ldl CC=mpicc LDFLAGS=-L/path to installation directory/lib CPPFLAGS=-I/path to installation directory/include ./configure --disable-shared --enable-parallel-tests --enable-pnetcdf --prefix=/path to installation directory

make install

When linking a code (e.g. Parallel UEB) use 
      -lpnetcdf -lhdf5_hl -lhdf5 -ldl -lm -lz -ldl