Visualizing differences between alternative multiple sequence alignments of the same dataset

A fast multiple sequence alignment program.

Multiple sequence alignment tool that builds on the concept of seed-and-extend algorithms

A statistical measure for gauging the polymorphic extent of sequences in a multiple sequence alignment.

A python pipeline that brings together tools for generation of consensus sequence, multiple sequence alignment, and phylogenetic analysis.

GACMSA: Get Allele counts from Multiple Sequence Alignment files

A collection of phylogenetics tutorials delivered to colleagues at the Centre for Biological Control (CBC). Topics include producing Bayesian and Maximum Likelihood trees, haplotype networks, reading phylogenies into R, analysing ISSR and SSR data, and using STRUCTURE and SplitsTree.

Bioinformatic Course - Programming Assignments - Winter 2022

Several small Bioinformatics projects implementing related algorithms, including Semi-Global alignment, Multiple Sequence Alignment using Star-Alignment, and MSA using PSSM profiles considering Gaps.

Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you need is a reference genome and some short reads

MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis

(Deep) Reinforcement Learning Framework to align multiple sequences.

ALPHAMALIG(ALPHAbet Multiple ALIGnment)

An alignment editor for phylogenetic purposes

Detect and annotate proteoforms/domains from RNA-Seq multiple sequence alignments

An assignment made for university.

Course project: Bioinformatics (BIO) ➟ Multiple sequence alignment of 10 genetic sequences of SARS-2 (gene 3) – T-Coffee