allpaths-lg.rb

class LinuxRequirement < Requirement
  fatal true
  satisfy OS.linux?
  def message
    "This software only builds on Linux."
  end
end

class AllpathsLg < Formula
  desc "Short read genome assembler"
  homepage "http://www.broadinstitute.org/software/allpaths-lg/blog/"
  # doi "10.1073/pnas.1017351108"
  # tag "bioinformatics"

  url "ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/allpathslg-50378.tar.gz"
  sha256 "12d5f78a67a79b2bba06e2dff25302590fede62639cfb4db08d76e103871f4b2"

  # Prove us wrong!
  # https://github.com/Homebrew/homebrew-science/issues/1329#issuecomment-68387020
  depends_on LinuxRequirement

  fails_with :clang do
    cause "The only supported compiler is GCC(>=4.7)."
  end

  fails_with :gcc do
    build 5666
    cause "You must compile this with g++ 4.7 or higher."
  end

  def install
    system "./configure",
      "--disable-dependency-tracking",
      "--prefix=#{prefix}"
    system "make", "install"
  end

  test do
    system "#{bin}/RunAllPathsLG", "--version"
  end
end