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Abricate_on_Megahit_Contigs.txt
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Abricate_on_Megahit_Contigs.txt
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Lmod is automatically replacing "intel/2020.1.217" with "gcc/9.3.0".
Due to MODULEPATH changes, the following have been reloaded:
1) openmpi/4.0.3
abricate databases are located in $EBROOTABRICATE/db
Using nucl database ncbi: 5386 sequences - 2021-Oct-12
Processing: COR01e_t2_M.contigs.fa.gz
#FILE SEQUENCE START END STRAND GENE COVERAGE COVERAGE_MAP GAPS %COVERAGE %IDENTITY DATABASE ACCESSION PRODUCT RESISTANCE
Found 17 genes in COR01e_t2_M.contigs.fa.gz
Tip: found a bug in abricate? Post it at https://github.com/tseemann/abricate/issues.
Done.
COR01e_t2_M.contigs.fa.gz k141_107671 556 1347 - aadA1 1-792/792 =============== 0/0 100.00 99.87 ncbi NG_052266.1 ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1 STREPTOMYCIN
COR01e_t2_M.contigs.fa.gz k141_107671 1460 2290 - blaOXA-4 1-831/831 =============== 0/0 100.00 100.00 ncbi NG_049688.1 OXA-1 family oxacillin-hydrolyzing class D beta-lactamase OXA-4 BETA-LACTAM
COR01e_t2_M.contigs.fa.gz k141_107671 2409 3041 - catB3 1-633/633 =============== 0/0 100.00 99.84 ncbi NG_047604.1 type B-3 chloramphenicol O-acetyltransferase CatB3 CHLORAMPHENICOL
COR01e_t2_M.contigs.fa.gz k141_107671 3183 3977 - aph(3')-XV 1-795/795 =============== 0/0 100.00 100.00 ncbi NG_047455.1 aminoglycoside O-phosphotransferase APH(3')-XV AMIKACIN;KANAMYCIN
COR01e_t2_M.contigs.fa.gz k141_107671 4036 4562 - ant(2'')-Ia 8-534/534 =============== 0/0 98.69 100.00 ncbi NG_047387.1 aminoglycoside nucleotidyltransferase ANT(2'')-Ia GENTAMICIN;KANAMYCIN;TOBRAMYCIN
COR01e_t2_M.contigs.fa.gz k141_107671 4573 5046 - dfrA1 1-474/474 =============== 0/0 100.00 99.79 ncbi NG_047676.1 trimethoprim-resistant dihydrofolate reductase DfrA1 TRIMETHOPRIM
COR01e_t2_M.contigs.fa.gz k141_149569 3285 4490 - tet(B) 1-1206/1206 =============== 0/0 100.00 100.00 ncbi NG_048161.1 tetracycline efflux MFS transporter Tet(B) TETRACYCLINE
COR01e_t2_M.contigs.fa.gz k141_155423 4083 4943 + blaTEM-235 1-861/861 =============== 0/0 100.00 99.88 ncbi NG_059898.1 class A beta-lactamase TEM-235 BETA-LACTAM
COR01e_t2_M.contigs.fa.gz k141_171885 747 1922 - tet(C) 1-1176/1176 =============== 0/0 100.00 100.00 ncbi NG_048175.1 tetracycline efflux MFS transporter Tet(C) TETRACYCLINE
COR01e_t2_M.contigs.fa.gz k141_173169 31100 31939 - sul1 1-840/840 =============== 0/0 100.00 100.00 ncbi NG_048082.1 sulfonamide-resistant dihydropteroate synthase Sul1 SULFONAMIDE
COR01e_t2_M.contigs.fa.gz k141_176891 39 1241 - tet(H) 1-1203/1203 =============== 0/0 100.00 100.00 ncbi NG_048194.1 tetracycline efflux MFS transporter Tet(H) TETRACYCLINE
COR01e_t2_M.contigs.fa.gz k141_176891 2335 3150 + sul2 1-816/816 =============== 0/0 100.00 100.00 ncbi NG_051852.1 sulfonamide-resistant dihydropteroate synthase Sul2 SULFONAMIDE
COR01e_t2_M.contigs.fa.gz k141_191335 8812 10731 - tet(M) 1-1920/1920 =============== 0/0 100.00 99.84 ncbi NG_048250.1 tetracycline resistance ribosomal protection protein Tet(M) TETRACYCLINE
COR01e_t2_M.contigs.fa.gz k141_191335 11411 12156 + erm(B) 1-747/747 ========/====== 1/1 99.87 99.60 ncbi NG_047801.1 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) MACROLIDE
COR01e_t2_M.contigs.fa.gz k141_196725 1313 2488 + tet(Y) 1-1176/1176 =============== 0/0 100.00 100.00 ncbi NG_048309.1 tetracycline efflux MFS transporter Tet(Y) TETRACYCLINE
COR01e_t2_M.contigs.fa.gz k141_31636 109 945 - aph(6)-Id 1-837/837 =============== 0/0 100.00 100.00 ncbi NG_047464.1 aminoglycoside O-phosphotransferase APH(6)-Id STREPTOMYCIN
COR01e_t2_M.contigs.fa.gz k141_31636 945 1772 - aph(3'')-Ib 1-828/828 =============== 0/0 100.00 99.88 ncbi NG_056002.2 aminoglycoside O-phosphotransferase APH(3'')-Ib STREPTOMYCIN