-
Notifications
You must be signed in to change notification settings - Fork 54
/
spm_P.m
45 lines (40 loc) · 1.47 KB
/
spm_P.m
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
function [P,p,Ec,Ek] = spm_P(c,k,Z,df,STAT,R,n,S)
% Return the [un]corrected P value using unified EC theory
% FORMAT [P,p,Ec,Ek] = spm_P(c,k,Z,df,STAT,R,n,S)
%
% c - cluster number
% k - extent {RESELS}
% Z - height {minimum over n values}
% df - [df{interest} df{error}]
% STAT - Statistical field
% 'Z' - Gaussian field
% 'T' - T - field
% 'X' - Chi squared field
% 'F' - F - field
% 'P' - Posterior probability
% R - RESEL Count {defining search volume}
% n - number of component SPMs in conjunction
% S - Voxel count
%
% P - corrected P value - P(C >= c | K >= k}
% p - uncorrected P value
% Ec - expected total number of clusters
% Ek - expected total number of resels per cluster
%
%__________________________________________________________________________
%
% spm_P determines corrected and uncorrected p values, using the minimum
% of different valid methods.
%
% See also: spm_P_RF, spm_P_Bonf
%__________________________________________________________________________
% Copyright (C) 2001-2011 Wellcome Trust Centre for Neuroimaging
% Thomas Nichols
% $Id: spm_P.m 4419 2011-08-03 18:42:35Z guillaume $
if nargin < 8, S = []; end
[P,p,Ec,Ek] = spm_P_RF(c,k,Z,df,STAT,R,n);
% Compare with Bonferroni P value (if possible)
%--------------------------------------------------------------------------
if ~isempty(S) && (c == 1 && k == 0) && ~isequal(R, 1)
P = min(P, spm_P_Bonf(Z,df,STAT,S,n));
end