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[FEA] sc.tl.ingest #182

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maarten-devries opened this issue Apr 29, 2024 · 2 comments
Open

[FEA] sc.tl.ingest #182

maarten-devries opened this issue Apr 29, 2024 · 2 comments

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@maarten-devries
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Is your feature request related to a problem? Please describe.
I wish I could use rapids-singlecell to map labels and embeddings from reference data to new data

Describe the solution you'd like
Using GPU to speed up sc.tl.ingest

Is there a CPU based implementation
https://scanpy.readthedocs.io/en/stable/generated/scanpy.tl.ingest.html

@maarten-devries maarten-devries added the enhancement New feature or request label Apr 29, 2024
@Intron7
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Intron7 commented Apr 29, 2024

@maarten-devries I would have to look into the algorithm and code more closely to see if a port is possible. The Trees that ingest uses might be an issue. But I'll have a closer look into it.

@maarten-devries
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Not a high priority, more of a nice to have. Happy to help have a look at this whenever I have some time.
Thanks for the great package, by the way.

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