time.dat |
Every saved time point. |
population_sizes.dat |
Total population size (across both habitats). |
ecotype_population_sizes.dat |
Population size of each ecotype. |
habitat_resources.dat |
Equilibrium resource concentration of each resource in each habitat. |
trait_means.dat |
Mean value of each trait across the whole population. |
trait_ecotype_means.dat |
Mean value of each trait in each ecotype. |
trait_varP.dat, trait_varG.dat, trait_varA.dat, trait_varD.dat, trait_varI.dat, trait_varN.dat |
Respectively the phenotypic, genetic, additive, dominance, interaction and non-additive variance for each trait. |
trait_varT.dat |
Variance in allele frequencies across loci coding for each trait. |
trait_Pst.dat, trait_Gst.dat, trait_Qst.dat, trait_Cst.dat |
Respectively the differentiation statistics between ecotypes for the phenotypic, genetic, additive and non-additive variance for each trait. |
trait_Fst.dat |
Fixation index, or genetic differentiation between the two ecotypes, for each trait. |
EI.dat, SI.dat, RI.dat |
Ecological, spatial and reproductive isolation between ecotypes, respectively. |
locus_varP.dat, locus_varG.dat, locus_varA.dat, locus_varD.dat, locus_varI.dat, locus_varN.dat |
Respectively the phenotypic, genetic, additive, dominance, interaction and non-additive variance for each locus in the genome. |
locus_Pst.dat, locus_Gst.dat, locus_Qst.dat, locus_Cst.dat, locus_Fst.dat |
Respectively the Pst, Gst, Qst, Cst and Fst for each locus. |
locus_alpha.dat |
The average mutational effect (i.e. slope of the regression of genetic values against genotypes across the whole population) of each locus. |
locus_meang.dat |
The mean genetic value of each locus in the whole population. |
locus_freq.dat |
The allele frequency (of the 1-allele) for each locus in the whole population. |
locus_ecotype_freq.dat |
The allele frequencies for each locus within each ecotype. |
locus_ecotype_hobs.dat |
The observed heterozygosity for each locus within each ecotype. |
edge_corgen.dat, edge_corbreed.dat, edge_corfreq.dat |
Respectively the pairwise correlations in genetic value, breeding value and allele frequency between the two interacting loci for each edge in all three networks (ordered by trait). |
edge_avgi.dat, edge_avgj.dat |
The expected epistatic variance in average effect of the first and second interacting loci, respectively, for each edge. edge_avgi corresponds to the expected effect of genetic variation at locus i on the variation in the additive effect of allele substitutions at locus j, and vice versa for edge_avgj. This is mostly for plotting purposes, to detect genes that are expected to modify the additive effects of their interacting partners. |
individual_ecotypes.dat, individual_habitats.dat |
The ecotype and habitat of each individual. |
individual_traits.dat |
The value of each trait for each individual. |
individual_midparents.dat |
The midparent phenotype (i.e. the mean between maternal and paternal values) for each trait for each individual. |