diff --git a/README.Rmd b/README.Rmd index 8dd6c53..b2fb688 100644 --- a/README.Rmd +++ b/README.Rmd @@ -27,7 +27,7 @@ knitr::opts_chunk$set( [![Codecov test coverage](https://codecov.io/gh/ropensci/dynamite/branch/main/graph/badge.svg)](https://app.codecov.io/gh/ropensci/dynamite?branch=main) [![Status at rOpenSci Software Peer Review](https://badges.ropensci.org/554_status.svg)](https://github.com/ropensci/software-review/issues/554) [![dynamite status badge](https://ropensci.r-universe.dev/badges/dynamite)](https://ropensci.r-universe.dev) -[![dynamite CRAN badge](http://www.r-pkg.org/badges/version/dynamite)](https://cran.r-project.org/package=dynamite) +[![dynamite CRAN badge](https://www.r-pkg.org/badges/version/dynamite)](https://cran.r-project.org/package=dynamite) The `dynamite` [R](https://www.r-project.org/) package provides an easy-to-use interface for Bayesian inference of complex panel (time series) data comprising of multiple measurements per multiple individuals measured in time via dynamic multivariate panel models (DMPM). The main features distinguishing the package and the underlying methodology from many other approaches are: diff --git a/README.md b/README.md index 7dab2b7..772909a 100644 --- a/README.md +++ b/README.md @@ -16,7 +16,7 @@ Review](https://badges.ropensci.org/554_status.svg)](https://github.com/ropensci [![dynamite status badge](https://ropensci.r-universe.dev/badges/dynamite)](https://ropensci.r-universe.dev) [![dynamite CRAN -badge](http://www.r-pkg.org/badges/version/dynamite)](https://cran.r-project.org/package=dynamite) +badge](https://www.r-pkg.org/badges/version/dynamite)](https://cran.r-project.org/package=dynamite) The `dynamite` [R](https://www.r-project.org/) package provides an @@ -109,25 +109,25 @@ print(gaussian_example_fit) #> #> No divergences, saturated max treedepths or low E-BFMIs. #> -#> Smallest bulk-ESS: 661 (sigma_nu_y_alpha) -#> Smallest tail-ESS: 1058 (sigma_nu_y_alpha) -#> Largest Rhat: 1.003 (sigma_y) +#> Smallest bulk-ESS: 651 (sigma_nu_y_alpha) +#> Smallest tail-ESS: 853 (sigma_nu_y_alpha) +#> Largest Rhat: 1.002 (beta_y_z) #> #> Elapsed time (seconds): #> warmup sample -#> chain:1 5.824 3.531 -#> chain:2 5.669 3.612 +#> chain:1 10.157 6.377 +#> chain:2 10.431 5.864 #> #> Summary statistics of the time- and group-invariant parameters: #> # A tibble: 6 × 10 #> variable mean median sd mad q5 q95 rhat ess_bulk ess_tail #> -#> 1 beta_y_z 1.97 1.97 0.0116 0.0112 1.95 1.99 1.00 2815. 1434. -#> 2 sigma_nu_y… 0.0944 0.0933 0.0114 0.0107 0.0780 0.114 1.00 661. 1058. -#> 3 sigma_y 0.198 0.198 0.00373 0.00362 0.192 0.204 1.00 2580. 1254. -#> 4 tau_alpha_y 0.212 0.205 0.0483 0.0432 0.146 0.301 1.00 1731. 1606. -#> 5 tau_y_x 0.364 0.355 0.0740 0.0648 0.266 0.494 1.00 2812. 1504. -#> 6 tau_y_y_la… 0.107 0.105 0.0219 0.0213 0.0781 0.148 1.00 2387. 1682. +#> 1 beta_y_z 1.97 1.97 0.0118 0.0119 1.95 1.99 1.00 3946. 1727. +#> 2 sigma_nu_y… 0.0946 0.0938 0.0116 0.0108 0.0772 0.115 1.00 651. 853. +#> 3 sigma_y 0.198 0.198 0.00371 0.00378 0.192 0.204 1.00 2734. 1459. +#> 4 tau_alpha_y 0.213 0.207 0.0481 0.0456 0.146 0.302 1.00 1797. 1634. +#> 5 tau_y_x 0.362 0.352 0.0683 0.0607 0.269 0.488 1.00 2600. 1492. +#> 6 tau_y_y_la… 0.107 0.104 0.0204 0.0193 0.0777 0.144 0.999 2118. 1899. ``` Posterior estimates of time-varying effects: diff --git a/man/figures/README-unnamed-chunk-10-1.png b/man/figures/README-unnamed-chunk-10-1.png index 5c65e20..57abe10 100644 Binary files a/man/figures/README-unnamed-chunk-10-1.png and b/man/figures/README-unnamed-chunk-10-1.png differ diff --git a/man/figures/README-unnamed-chunk-7-1.png b/man/figures/README-unnamed-chunk-7-1.png index 042c8c3..fa7907d 100644 Binary files a/man/figures/README-unnamed-chunk-7-1.png and b/man/figures/README-unnamed-chunk-7-1.png differ diff --git a/man/figures/README-unnamed-chunk-8-1.png b/man/figures/README-unnamed-chunk-8-1.png index 40bcdad..7df0919 100644 Binary files a/man/figures/README-unnamed-chunk-8-1.png and b/man/figures/README-unnamed-chunk-8-1.png differ diff --git a/man/figures/README-unnamed-chunk-9-1.png b/man/figures/README-unnamed-chunk-9-1.png index cc4388b..c5fa5db 100644 Binary files a/man/figures/README-unnamed-chunk-9-1.png and b/man/figures/README-unnamed-chunk-9-1.png differ