diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml index 296f3674..a558612a 100644 --- a/.github/workflows/check-bioc.yml +++ b/.github/workflows/check-bioc.yml @@ -126,31 +126,31 @@ jobs: if: matrix.config.os == 'macOS-latest' run: | ## Enable installing XML from source if needed - brew install libxml2 - echo "XML_CONFIG=/usr/local/opt/libxml2/bin/xml2-config" >> $GITHUB_ENV - - ## Required to install magick as noted at - ## https://github.com/r-lib/usethis/commit/f1f1e0d10c1ebc75fd4c18fa7e2de4551fd9978f#diff-9bfee71065492f63457918efcd912cf2 - brew install imagemagick@6 - - ## For textshaping, required by ragg, and required by pkgdown - brew install harfbuzz fribidi - - brew install libgit2 - ## Helps compile RCurl from source - ## brew uninstall curl - - ## required for ncdf4 - can not use the homebrew one because that uses GCC - ## Use pre-compiled libraries from https://mac.r-project.org/libs-4/ - curl -O https://mac.r-project.org/libs-4/netcdf-4.7.4-darwin.17-x86_64.tar.gz - tar fvxzm netcdf-4.7.4-darwin.17-x86_64.tar.gz -C / - rm netcdf-4.7.4-darwin.17-x86_64.tar.gz - curl -O https://mac.r-project.org/libs-4/hdf5-1.12.0-darwin.17-x86_64.tar.gz - tar fvxzm hdf5-1.12.0-darwin.17-x86_64.tar.gz -C / - rm hdf5-1.12.0-darwin.17-x86_64.tar.gz - curl -O https://mac.r-project.org/libs-4/szip-2.1.1-darwin.17-x86_64.tar.gz - tar fvxzm szip-2.1.1-darwin.17-x86_64.tar.gz -C / - rm szip-2.1.1-darwin.17-x86_64.tar.gz + # brew install libxml2 + # echo "XML_CONFIG=/usr/local/opt/libxml2/bin/xml2-config" >> $GITHUB_ENV + + # ## Required to install magick as noted at + # ## https://github.com/r-lib/usethis/commit/f1f1e0d10c1ebc75fd4c18fa7e2de4551fd9978f#diff-9bfee71065492f63457918efcd912cf2 + # brew install imagemagick@6 + + # ## For textshaping, required by ragg, and required by pkgdown + # brew install harfbuzz fribidi + + # brew install libgit2 + # ## Helps compile RCurl from source + # ## brew uninstall curl + + # ## required for ncdf4 - can not use the homebrew one because that uses GCC + # ## Use pre-compiled libraries from https://mac.r-project.org/libs-4/ + # curl -O https://mac.r-project.org/libs-4/netcdf-4.7.4-darwin.17-x86_64.tar.gz + # tar fvxzm netcdf-4.7.4-darwin.17-x86_64.tar.gz -C / + # rm netcdf-4.7.4-darwin.17-x86_64.tar.gz + # curl -O https://mac.r-project.org/libs-4/hdf5-1.12.0-darwin.17-x86_64.tar.gz + # tar fvxzm hdf5-1.12.0-darwin.17-x86_64.tar.gz -C / + # rm hdf5-1.12.0-darwin.17-x86_64.tar.gz + # curl -O https://mac.r-project.org/libs-4/szip-2.1.1-darwin.17-x86_64.tar.gz + # tar fvxzm szip-2.1.1-darwin.17-x86_64.tar.gz -C / + # rm szip-2.1.1-darwin.17-x86_64.tar.gz - name: Install Windows system dependencies if: runner.os == 'Windows'