-
Notifications
You must be signed in to change notification settings - Fork 25
/
DESCRIPTION
103 lines (103 loc) · 3.48 KB
/
DESCRIPTION
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
Package: Spectra
Title: Spectra Infrastructure for Mass Spectrometry Data
Version: 1.15.13
Description: The Spectra package defines an efficient infrastructure
for storing and handling mass spectrometry spectra and functionality to
subset, process, visualize and compare spectra data. It provides different
implementations (backends) to store mass spectrometry data. These comprise
backends tuned for fast data access and processing and backends for very
large data sets ensuring a small memory footprint.
Authors@R: c(person(given = "RforMassSpectrometry Package Maintainer",
email = "[email protected]",
role = "cre"),
person(given = "Laurent", family = "Gatto",
email = "[email protected]",
role = "aut",
comment = c(ORCID = "0000-0002-1520-2268")),
person(given = "Johannes", family = "Rainer",
email = "[email protected]",
role = "aut",
comment = c(ORCID = "0000-0002-6977-7147")),
person(given = "Sebastian", family = "Gibb",
email = "[email protected]",
role = "aut",
comment = c(ORCID = "0000-0001-7406-4443")),
person(given = "Philippine", family = "Louail",
email = "[email protected]",
role = c("aut"),
comment = c(ORCID = "0009-0007-5429-6846")),
person(given = "Jan", family = "Stanstrup",
email = "[email protected]",
role = "ctb",
comment = c(ORCID = "0000-0003-0541-7369")),
person(given = "Nir", family = "Shahaf",
email = "[email protected]",
role = "ctb"),
person(given = "Mar", family = "Garcia-Aloy",
email = "[email protected]",
comment = c(ORCID = "0000-0002-1330-6610"),
role = "ctb"))
Depends:
R (>= 4.0.0),
S4Vectors,
BiocParallel
Imports:
ProtGenerics (>= 1.37.1),
methods,
IRanges,
MsCoreUtils (>= 1.7.5),
graphics,
grDevices,
stats,
tools,
utils,
fs,
BiocGenerics,
MetaboCoreUtils
Suggests:
testthat,
knitr (>= 1.1.0),
msdata (>= 0.19.3),
roxygen2,
BiocStyle (>= 2.5.19),
mzR (>= 2.19.6),
rhdf5 (>= 2.32.0),
rmarkdown,
vdiffr (>= 1.0.0),
msentropy,
patrick
License: Artistic-2.0
LazyData: false
VignetteBuilder: knitr
BugReports: https://github.com/RforMassSpectrometry/Spectra/issues
URL: https://github.com/RforMassSpectrometry/Spectra
biocViews: Infrastructure, Proteomics, MassSpectrometry, Metabolomics
Encoding: UTF-8
RoxygenNote: 7.3.2
Roxygen: list(markdown=TRUE)
Collate:
'hidden_aliases.R'
'AllGenerics.R'
'MsBackend-functions.R'
'MsBackend.R'
'MsBackendCached.R'
'MsBackendDataFrame-functions.R'
'MsBackendDataFrame.R'
'MsBackendHdf5Peaks-functions.R'
'MsBackendHdf5Peaks.R'
'MsBackendMemory-functions.R'
'MsBackendMemory.R'
'MsBackendMzR-functions.R'
'MsBackendMzR.R'
'Spectra-estimatePrecursorMz.R'
'Spectra-functions.R'
'Spectra.R'
'Spectra-neutralLoss.R'
'countIdentifications.R'
'fft_spectrum.R'
'functions-util.R'
'mz-delta-functions.R'
'peak-list-functions.R'
'peaks-functions.R'
'plotting-functions.R'
'zzz.R'